Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2381 179 4e-40 seq33024 127 2e-24 seq80314 104 3e-17 seq100015 96.9 4e-15 >seq2381 Length=21385 Score = 179 bits (198), Expect = 4e-40 Identities = 429/638 (67%), Gaps = 18/638 (3%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || || || || || || || || ||||| |||||||| || |||| | ||||| Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| |||| | || || |||||||| || | | ||||||| || || | Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 || ||||| || |||||||| ||||| |||||| || | ||||| || | | Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 24024 TTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | || | || | | |||| || ||| || || || ||||| || | || | Sbjct 13862 GCACACGGTAACGCGTCACA--AACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTA 13919 Query 24082 TAGATCTTACTGTTTCTTCACTCGGTGGATAC---AATAAAT-GTTTAAACATCAAACAT 24137 || | | ||| | || || |||| | | |||| | || ||| ||||||| Sbjct 13920 TACTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGAGAGTATAA----CAAACAT 13975 Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 ||||||||||| || || || ||||||| | |||||| ||||| || || || ||||| Sbjct 13976 GCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCA 14035 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAAT 24256 ||||||| ||||||||||| ||||| ||||| | |||| || |||||| ||||| || Sbjct 14036 GGCATTAAACCACGCTTTTTCAGCCAGAATATAG-CGCAGAAGCTTCCAGAGAAGAATAT 14094 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TCATGTATC 24314 ||||| || ||||| ||||| | || ||| | || || | | | |||||| Sbjct 14095 CCCTTCAACACAAGCAAATGCAATTATTCGCTCTGC--AAACGATTCCGAACCGTGTATC 14152 Query 24315 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 24374 || | |||||||| ||||| || ||| || || || || | |||| |||| Sbjct 14153 CAGCGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAAG 14212 Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434 ||| |||||| ||||| || ||| ||||||| | ||| ||||||||| Sbjct 14213 AGACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTCG 14272 Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 |||||||||||||| || || ||||| || ||||| || Sbjct 14273 GAATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAA 14310 >seq33024 Length=3557 Score = 127 bits (140), Expect = 2e-24 Identities = 396/607 (65%), Gaps = 7/607 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| |||||| |||||||| ||||||| |||||||||| | ||| || ||||| || | Sbjct 1312 ACAACAAACAGGCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1371 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | || || || ||||||| || || || || ||||||||||| | |||| || |||| Sbjct 1372 AGGTAAGCCCCGGCATTAATCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCA 1430 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || ||||| || ||||| || || || || | || || || | ||| | | | Sbjct 1431 GAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCG 1490 Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 | | ||||| |||||||| ||||| || ||| || || ||||| | | Sbjct 1491 CCGTCGATCCAGCGCAAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACA 1550 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT-CAATCAAAAGACT 24424 ||| || | | |||||| | ||| |||| || || | |||| | ||| Sbjct 1551 GCACGGAATAAACCCGATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAG-GA 1609 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 |||||||| ||||| || ||||| || || |||||||| ||||| || ||| || || Sbjct 1610 GTACATTTCGGAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTC 1669 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 | || || ||||| | || || || | ||| || ||| || |||||| Sbjct 1670 AGGAAGTTGAACTTCCTTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGA 1729 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT- 24603 || || || || || | || || | || |||| ||| || | || || | | Sbjct 1730 TGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTC 1789 Query 24604 --TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 ||| | | | ||| ||||| ||| |||||||| | ||||| || || || || Sbjct 1790 GGACCAGTGACGTAAATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTC 1849 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 24721 || ||||| ||||| | |||||| | | ||| ||||| || || |||| || Sbjct 1850 GGCTTTTTTGTACATTTCCCAGATTTGGGGGAATTTGATTGGGAACATGCAGAATCGATC 1909 Query 24722 TGGATTT 24728 ||| ||| Sbjct 1910 TGGGTTT 1916 >seq80314 Length=1716 Score = 104 bits (114), Expect = 3e-17 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 |||||| ||||||||||| || || || ||||||| | |||||| || || || || || Sbjct 974 CAAACACGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGT 915 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 ||||| ||||||| || |||||||| ||||| ||||| | | || || |||||| | Sbjct 914 TAGTCCAGGCATTAAACCTCGCTTTTTCAGCCAGAATATAG-CACATAAACTTCCAGAGA 856 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA 24293 |||| | |||||| || ||||| ||||| | || ||| || Sbjct 855 AGAATACTCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA 812 >seq100015 Length=1511 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| |||||| ||||| || ||||||| |||||||||| | ||| || ||||| || | Sbjct 1220 ACAACAAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1279 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | || || || ||||||| || || || || ||||||||||| | |||| || |||| Sbjct 1280 AGGTAAGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCA 1338 Query 24246 GAAAAGAAAATTCCTTCTAC 24265 || ||||| || ||||| || Sbjct 1339 GAGAAGAATATCCCTTCAAC 1358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591437849865600