Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq11074 116 3e-21 seq59535 91.5 1e-13 seq9218 91.5 1e-13 seq60406 87.8 2e-12 seq51823 87.8 2e-12 seq31228 82.4 7e-11 >seq11074 Length=8391 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| |||||| | ||||| | || |||||||| || ||| ||| ||| | Sbjct 477 AAAAATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAATC 536 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 |||| || | | | || | || || || || |||||||| | || || Sbjct 537 ATCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCTGA 596 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||||||| | ||||||||||| || |||||||| |||||| ||| | |||||||| Sbjct 597 TCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAGCCGATTA 656 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||| ||||| |||||||||||||| | || ||||| Sbjct 657 CAATATCCAGAAAGAATCTACTCTTCATCTTGTTTTACG 695 >seq59535 Length=2228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28955 TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA 29014 || ||||||||| || ||| | ||||| | || |||||||| || ||| ||| || Sbjct 1758 TGCAAAAATGCAGATCTTCGTAAAAACCCTAACCGGCAAAACAATCACCCTCGAGGTTGA 1699 Query 29015 ACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT 29074 | || | || || | | | || | || ||||| || |||||||| | || Sbjct 1698 ATCCTCCGACACAATCGACAATGTCAAAACCAAAATCCAAGACAAAGAAGGAATCCCACC 1639 Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||| |||||| | || ||||| || || |||||||| |||||| | || | ||||| Sbjct 1638 AGACCAACAACGTCTAATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACCCTCGCCGA 1579 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||||| || ||||||||||| ||||| || Sbjct 1578 CTACAACATCCAGAAGGAATCCACTCTCCA 1549 >seq9218 Length=18002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || | || || ||||| |||||| ||| ||| | | Sbjct 14885 ATGCAGATTTTCGTCAAGACTCTAACTGGGAAAACTATTACCCTGGAAGTCGAAAGCTCG 14826 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||| || ||||||||||| | || |||||| Sbjct 14825 GACACCATTGACAATGTGAAGACAAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCAG 14766 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| || |||||| ||||||| || | || ||||||||| Sbjct 14765 CAGAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGGCGTACCCTAGCTGATTACAAT 14706 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || ||||| || ||||| Sbjct 14705 ATTCAGAAGGAGTCGACTCTCCATTTGGTG 14676 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| |||| || ||||| || || |||||||| || ||| || Sbjct 15341 ATGCAGATATTTGTCAAGACTTTGACTGGAAAGACCATTACTTTGGAGGTCGAAAGTTCA 15282 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| ||||| || ||| | || ||| || Sbjct 15281 GACACCATTGATAATGTAAAGACTAAGATTCAGGATAAGGAGGGTATTCCTCCAGACCAG 15222 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||||| || ||| ||| |||| || || || Sbjct 15221 CAAAGATTGATCTTTGCTGGAAAACAACTCGAGGATGGTCGTACTTTGGCTGACTATAAC 15162 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAgg 29188 ||||||||||| |||||||||||| |||| | || |||| || || Sbjct 15161 ATTCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGTCTACGCGGTGG 15115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| | || || ||||| || || ||||| || || ||| | | Sbjct 15113 ATGCAGATATTTGTTAAGACTTTGACCGGGAAGACCATCACTTTGGAGGTGGAGAGCTCT 15054 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| |||||| ||||| ||||| | ||| |||||| Sbjct 15053 GATACTATTGACAATGTCAAGACGAAAATTCAAGATAAGGAAGGGATTCCCCCAGATCAG 14994 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| || |||||| ||||||| || | || ||||||||| Sbjct 14993 CAGAGATTGATCTTTGCCGGGAAACAATTGGAAGACGGGCGTACCCTAGCTGATTACAAT 14934 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 ||||||||||| || ||||| || ||||| | || || Sbjct 14933 ATTCAGAAGGAGTCGACTCTCCATTTGGTGCTTCGTTT 14896 >seq60406 Length=2202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| ||||| || || ||||||||| ||| || | | Sbjct 1328 ATGCAGATTTTTGTGAAAACCTTGACTGGAAAGACCATTACCCTCGAGGTTGAGAGCTCT 1269 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || |||||| ||||| |||||| | ||| |||||| Sbjct 1268 GATACTATTGACAATGTCAAAACTAAAATTCAGGATAAGGAAGGTATCCCCCCAGATCAG 1209 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || || || || || | ||| |||| ||||| || Sbjct 1208 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACTTTGGCTGATTATAAC 1149 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAggg 29189 || |||||||| || || || || ||||| | || || | |||||| Sbjct 1148 ATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTTTGAGGGGAGGG 1101 >seq51823 Length=2487 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 29020 ||||| || ||| |||| |||||||| ||||| ||||| ||| || ||| | | || Sbjct 1801 ATGCAGATCTTCGTCAAGACATTGACTGGCAAGACCATCACCTTGGAGGTGGAGAGCAGC 1860 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| || ||| || || ||||| | || |||||| Sbjct 1861 -GACACAATTGACAATGTGAAGACTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 1919 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | |||||||| || ||||| |||| ||| ||| |||| || ||||| Sbjct 1920 GCAGAGGTTGATCTTTGCAGGGAAACAGTTGGAGGATGGGCGCACTTTGGCTGACTACAA 1979 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||||||||||||||| || ||| Sbjct 1980 TATTCAGAAGGAATCTACCCTCCAC 2004 >seq31228 Length=3734 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| ||||| ||||||||||| || || || ||||| Sbjct 3682 GATAAGGAAGGCATCCCACCGGATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTGGAG 3623 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | ||| |||||||||| || ||||||||||| ||||| || || Sbjct 3622 GATGGCCGCACTTTGGCCGATTATAACATTCAGAAGGAGTCTACCCTGCA 3573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426729595436600