Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq11074 111 1e-19 seq9218 91.5 1e-13 seq51823 87.8 1e-12 seq2831 87.8 1e-12 seq150073 86.0 5e-12 seq279023 84.2 2e-11 seq60406 82.4 6e-11 >seq11074 Length=8391 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| |||||| | ||||| | || |||||||| || ||| ||| ||| | Sbjct 477 AAAAATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAATC 536 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 |||| || | | | || |||| || || || |||||||| | || || Sbjct 537 ATCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCTGA 596 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||||||| | ||||||||||| || |||||| | |||||| ||| | |||||||| Sbjct 597 TCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAGCCGATTA 656 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||| || || |||||||||||||| | || ||||| Sbjct 657 CAATATCCAGAAAGAATCTACTCTTCATCTTGTTTTACG 695 >seq9218 Length=18002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || | || || ||||| |||||| ||| ||| | | Sbjct 14885 ATGCAGATTTTCGTCAAGACTCTAACTGGGAAAACTATTACCCTGGAAGTCGAAAGCTCG 14826 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| || ||||||||||| | || |||||| Sbjct 14825 GACACCATTGACAATGTGAAGACAAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCAG 14766 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | |||||||| || |||||||||||||| || | || ||||||||| Sbjct 14765 CAGAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGGCGTACCCTAGCTGATTACAAT 14706 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| ||||| || ||||| || ||||| Sbjct 14705 ATTCAGAAGGAGTCGACTCTCCATTTGGTG 14676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| | || || ||||| || || ||||| || || ||| | | Sbjct 15113 ATGCAGATATTTGTTAAGACTTTGACCGGGAAGACCATCACTTTGGAGGTGGAGAGCTCT 15054 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| |||||| ||||| ||||| | ||| |||||| Sbjct 15053 GATACTATTGACAATGTCAAGACGAAAATTCAAGATAAGGAAGGGATTCCCCCAGATCAG 14994 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | |||||||| || |||||||||||||| || | || ||||||||| Sbjct 14993 CAGAGATTGATCTTTGCCGGGAAACAATTGGAAGACGGGCGTACCCTAGCTGATTACAAT 14934 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252 ||||| ||||| || ||||| || ||||| | || || Sbjct 14933 ATTCAGAAGGAGTCGACTCTCCATTTGGTGCTTCGTTT 14896 >seq51823 Length=2487 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 25093 ||||| || ||| |||| |||||||| ||||| ||||| ||| || ||| | | || Sbjct 1801 ATGCAGATCTTCGTCAAGACATTGACTGGCAAGACCATCACCTTGGAGGTGGAGAGCAGC 1860 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || | ||| || ||| || || ||||| | || |||||| Sbjct 1861 -GACACAATTGACAATGTGAAGACTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 1919 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || | |||||||| || ||||| ||||| ||| ||| |||| || ||||| Sbjct 1920 GCAGAGGTTGATCTTTGCAGGGAAACAGTTGGAGGATGGGCGCACTTTGGCTGACTACAA 1979 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 |||||| ||||||||||| || ||| Sbjct 1980 TATTCAGAAGGAATCTACCCTCCAC 2004 >seq2831 Length=23904 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || |||||||| ||||| ||||| ||| || ||| | | Sbjct 5664 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACCATCACCTTGGAGGTGGAGAGCTCC 5723 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || || || || |||||| | || |||||| Sbjct 5724 GACACCATTGATAATGTGAAGACGAAGATACAAGACAAGGAAGGTATTCCTCCAGATCAG 5783 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || || ||||| || || |||||||||||| || |||| ||||||||| Sbjct 5784 CAGAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGCGTACCTTGGCTGATTACAAT 5843 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| |||||||| Sbjct 5844 ATTCAAAAGGAATCCACTCTTCA 5866 >seq150073 Length=1124 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| ||||| || ||||| || ||| ||| ||| | | Sbjct 57 AATGCAAATTTTTGTGAAAACCTTGACTGGGAAAACTATCACCTTAGAAGTGGAGAGCTC 116 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| ||| || ||||| ||||| | || |||||| Sbjct 117 TGATACTATCGATAATGTCAAGACAAAGATACAGGATAAGGAAGGGATCCCGCCAGATCA 176 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| | |||||||| || || || ||||| ||| | || |||| || || || Sbjct 177 GCAAAGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGCCGCACCTTGGCTGACTATAA 236 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 ||||||||||||||| || || ||| Sbjct 237 TATTCAAAAGGAATCGACCCTCCAC 261 >seq279023 Length=610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || || || || |||||| ||| ||| | | Sbjct 171 ATGCAAATTTTCGTGAAAACCCTTACCGGGAAGACTATTACCCTAGAAGTGGAGAGCTCT 230 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| || ||||| ||||| | || |||||| Sbjct 231 GATACTATTGACAATGTTAAGACAAAGATACAGGATAAGGAAGGGATCCCACCAGATCAG 290 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | |||||||| || || || ||||| ||| | ||| | || || |||||| Sbjct 291 CAAAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGCCGCACTTTAGCTGACTACAAT 350 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||||| || || ||| Sbjct 351 ATTCAAAAGGAATCAACCCTCCAC 374 >seq60406 Length=2202 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| ||||| || || ||||||||| ||| || | | Sbjct 1328 ATGCAGATTTTTGTGAAAACCTTGACTGGAAAGACCATTACCCTCGAGGTTGAGAGCTCT 1269 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || |||| |||||| ||||| |||||| | ||| |||||| Sbjct 1268 GATACTATTGACAATGTCAAAACTAAAATTCAGGATAAGGAAGGTATCCCCCCAGATCAG 1209 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || || || | || || | ||| |||| ||||| || Sbjct 1208 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACTTTGGCTGATTATAAC 1149 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || || ||||| || || || || ||||| | || || | |||||| Sbjct 1148 ATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTTTGAGGGGAGGG 1101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409256173356080