Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq9218 95.1 2e-14 seq9871 86.0 9e-12 >seq9218 Length=18002 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || | | |||||||| | ||| || || || ||||| ||||| | Sbjct 14659 CCACCCCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGCT 14718 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | || || ||||||||||| ||||| |||||||| |||||||| |||||| Sbjct 14719 AGGGTACGCCCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 14778 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 14779 ATCCCTTCTTTATCCTG 14795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | |||||| || || || ||||| || | | ||| | | ||| || Sbjct 15133 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTATAGTCAGCCAAAGTACGACCATCCTCG 15192 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||||||||| |||||||||||||| || |||||||| || || ||||| || Sbjct 15193 AGTTGTTTTCCAGCAAAGATCAATCTTTGCTGGTCTGGAGGAATACCCTCCTTATCCTG 15251 >seq9871 Length=9033 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 |||||||| || ||||||||||| | | ||| | | ||| || || ||||| ||| Sbjct 267 GTAGATTCCTTCTGAATATTATAATCAGCCAAAGTGCGCCCATCCTCCAACTGTTTCCCA 326 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || |||||||||||||| |||||||| || || || Sbjct 327 GCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTG 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740666425702400