Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq60406 98.7 6e-16 seq31228 95.1 8e-15 seq51823 93.3 3e-14 seq2831 87.8 1e-12 seq18381 86.0 4e-12 seq16687 86.0 4e-12 seq8115 86.0 4e-12 seq59535 84.2 1e-11 seq35076 84.2 1e-11 seq18408 84.2 1e-11 seq2675 84.2 1e-11 >seq60406 Length=2202 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| |||||||| ||||| || || | ||| ||| | || Sbjct 1345 AGCACAAGATGAAGAGTCGACTCTTTCTGAATGTTATAATCAGCCAGAGTTCGGCCATCC 1404 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||||||||| || |||| ||||||||| || | || ||||||||| Sbjct 1405 TCAAGTTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTC- 1463 Query 34298 GCTATCTTTTGCTTT--AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | || | | || | |||| ||||| |||| || || | Sbjct 1464 -CTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCGACCTCCAGAGTAATTG 1522 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | ||||| || || |||||||||||||| |||||| Sbjct 1523 TCTTGCCAGTTAGGGTTTTCACAAAGATTTGCATC 1557 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || || ||||| | || ||| ||||| || |||||||| Sbjct 870 GAAACCACCACGAAGACGGAGGACAAGGTGGAGGGTTGATTCCTTCTGAATATTGTAGTC 929 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GA 34277 | | ||| | || ||||||||||| ||||| || || | || |||||| || | Sbjct 930 AGCTAAGGTACGCCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTGG 989 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATT 34337 ||| | || |||||||| |||||| ||| | || | | || | ||| | | Sbjct 990 TGGGATCCCT-TCCTTGTCCTGTATCTTCGTCTTCACATTGTCAATAGTATCCGAGCTCT 1048 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 | || || | ||||| || || ||||| || || |||||||| ||||||||| ||| Sbjct 1049 CAACCTCTAAAGTGATTGTCTTCCCGGTAAGGGTCTTCACAAAAATCTGCATCCCTC 1105 >seq31228 Length=3734 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| ||||| ||||||| || ||| |||| Sbjct 3108 AGCACCAAGTGAAGCGTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGACCGTCC 3167 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || | || |||||||| ||| | | ||||||||| Sbjct 3168 TCCAGCTGCTTACCGGCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCT 3227 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | | || | || | || || || | ||||||||| Sbjct 3228 TGGATCTTTGTCTTGACATTGTCAATAGTGTCCGAGCTCTCAACTTCAAGGGTGATGGTT 3287 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || |||||||| |||||||| Sbjct 3288 TTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 3319 Score = 91.5 bits (100), Expect = 9e-14 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| ||| ||| | || |||| |||||| |||||||| Sbjct 2901 TCCTTCTGAATGTTGTAGTCGGCCAGGGTACGACCATCCTCCAGCTGCTTTCCTGCGAAG 2960 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || | || ||||| || ||| | || |||||||| || ||||| ||| | || Sbjct 2961 ATCAACCTTTGCTGATCAGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGTCTTCACAT 3018 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | || | ||||| || | |||||||| || ||||| || || || | Sbjct 3019 TGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCGGTAAGGGTCTTTA 3078 Query 34377 CAAAGATCTGCATCGCTC 34394 |||| ||||||||| ||| Sbjct 3079 CAAAAATCTGCATCCCTC 3096 >seq51823 Length=2487 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || ||| |||| || | ||||||||| |||||| Sbjct 1535 TCCTTCTGGATGTTGTAGTCCGCGAGTGTTCGGCCGTCTTCTAGCTGCTTGCCAGCGAAA 1476 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | | ||||||||| || || ||| | | | Sbjct 1475 ATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATTTTAGTCTTGACGTTG 1416 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||||| || | ||||| ||||||||||| | || || ||| Sbjct 1415 TCAATGGTGTCGGAACTCTCGACCTCAAGGGTGATTGTTTTGCCGGTCAAGGTCTTGACA 1356 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 1355 AAAATCTGCAT 1345 >seq2831 Length=23904 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || || || || | ||| || ||||| ||||| || || | Sbjct 5435 TCCACCGCGAAGACGGAGGACAAGATGGAGAGTCGACTCCTTCTGGATGTTATAATCAGC 5376 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | |||||| || |||||||| |||| ||||||||| ||| Sbjct 5375 AAGGGTACGACCGTCTTCTAGCTGCTTTCCGGCGAAAATAAGCCTCTGCTGGTCTGGGGG 5316 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | || | |||| ||||| Sbjct 5315 GATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAACTCTCGAC 5256 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| ||||| || || || ||||| ||||||||||| Sbjct 5255 CTCAAGGGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATCTGCAT 5208 >seq18381 Length=6025 Score = 86.0 bits (94), Expect = 4e-12 Identities = 165/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || || ||||| | || ||| || || || ||||| || Sbjct 1842 GAAACCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTTTGGATATTGTAATC 1901 Query 34219 GGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-G 34276 | || | || ||| | || ||||||||||| ||||| || || | || ||||| || | Sbjct 1902 AGCCAAGGTG-CGGCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCTTTGCTGATCTG 1960 Query 34277 ACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGAT 34336 ||| | || |||||||| ||||||| ||| | || | || | ||| | Sbjct 1961 GTGGGATCCCT-TCCTTGTCCTGTATCTTTGTCTTGACATTATCAATAGTATCCGAGCTC 2019 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || || || | ||||| || || || || |||||||||||||||||||||||| ||| Sbjct 2020 TCAACCTCTAAAGTGATCGTCTTCCCAGTAAGAGTTTTCACAAAGATCTGCATCCCTC 2077 >seq16687 Length=6431 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||||||||||||||| | || ||| |||| ||||||||||| || || || Sbjct 1434 TCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGGCCGTCCTCCAACTGCTTACCCGCAAAG 1493 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||||| || | || ||||||||| ||||| ||| | || | Sbjct 1494 ATAAGCCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTGGTCTTGACATTG 1553 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||||| || | || ||||| ||||| || || || || || Sbjct 1554 TCAATAGTGTCCGAGCTCTCGACCTCAAGAGTAATGGTCTTGCCAGTAAGGGTCTTGACG 1613 Query 34379 AAGATCTGCATC 34390 ||||| |||||| Sbjct 1614 AAGATTTGCATC 1625 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || || ||||| | ||| ||| || || ||||||||||| Sbjct 938 GAAACCACCACGGAGGCGGAGGACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTC 997 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GA 34277 | ||| ||| | || ||||||||||| ||||| || || | || |||||| || | Sbjct 998 AGCCAGGGTGCGGCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTGG 1057 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATT 34337 ||| | || ||||| || || ||| ||| | || | | || | || | | Sbjct 1058 TGGGATCCCT-TCCTTATCTTGGATTTTTGTCTTAACATTGTCAATGGTGTCTGAACTCT 1116 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || |||| |||||||| || ||||| || || ||||| || |||||||| Sbjct 1117 CAACTTCCAGAGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAAATCTGCAT 1168 >seq8115 Length=10241 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || |||| |||| || | || || || ||||| Sbjct 7304 TTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAA 7363 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||| ||||| || | | || ||||| ||||| || | || Sbjct 7364 GATGAGACGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGTTTTGACATT 7423 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | ||||| || || | ||||| ||||| || || || |||||||| Sbjct 7424 GTCGATTGTGTCTGAGGATTCAACCTCAAGGGTGATTGTTTTCCCAGTTAGGGTTTTCAC 7483 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 7484 GAAGATCTGCAT 7495 >seq59535 Length=2228 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || || || | ||| ||| ||||| ||||||||||||| Sbjct 1525 CCACCGCGAAGACGGAGGACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCG 1584 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | || || || ||||| || || || || ||||| || Sbjct 1585 AGGGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATTAGACGTTGTTGGTCTGGTGGG 1644 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| || ||| | ||| | || | | || | |||| ||||| || Sbjct 1645 ATTCCTTCTTTGTCTTGGAT-TTTGGTTTTGACATTGTCGATTGTGTCGGAGGATTCAAC 1703 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||||||||| || ||||| || ||||||||||| Sbjct 1704 CTCGAGGGTGATTGTTTTGCCGGTTAGGGTTTTTACGAAGATCTGCAT 1751 >seq35076 Length=3390 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 ||||| || |||||||| || | || ||| |||| || | |||||||||||| || Sbjct 1883 TCTTTTTGAATGTTGTAATCAGCGAGTGTTCGGCCGTCCTCAAGCTGCTTGCCTGCAAAG 1942 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT--AGAT 34316 || |||| |||||||| || | || ||||||||| || ||||| ||| | || Sbjct 1943 ATCAGCCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTC--CTGAATTTTGGTTTTAACAT 2000 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | ||| | ||||| || | || ||||| ||||| || || || || | Sbjct 2001 TGTCGATTGTATCAGAACTCTCGACCTCGAGAGTAATGGTCTTGCCTGTAAGGGTCTTGA 2060 Query 34377 CAAAGATCTGCATC 34390 ||||||| |||||| Sbjct 2061 CAAAGATTTGCATC 2074 >seq18408 Length=6019 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG-- 34220 || ||||| || | ||||| ||||| | ||| || ||||| ||||||||||| | Sbjct 652 CCACCGCGAAGGCGTAGCACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCT 711 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || | | || || || || | |||||||| || || || || || ||||||||| | Sbjct 712 ACGGTT--CGTTCATCTTCAAGTTGCTTGCCGGCAAATATAAGGCGTTGCTGGTCGGGTG 769 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTC 34338 | | || ||| ||||| || ||||| ||| | | | || || || | | ||| Sbjct 770 GGATGCCCTCTTTGTC--CTGGATTTTGGACTTAATGTTGTTGATTGAGTCAGATGGTTC 827 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||| || || || |||||||| | |||||||| || ||||||||| Sbjct 828 AACTTCCATGGTTATTGTCTTGCCGGTTAATGTTTTCACGAATATCTGCATC 879 >seq2675 Length=17436 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG-- 34220 || ||||| || | || || ||||| | ||| ||| ||||| ||||||||||| | Sbjct 15578 CCACCGCGAAGGCGAAGGACGAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCT 15519 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 |||| | ||||| || || | |||||||| || || || || || || ||||| | Sbjct 15518 ACAGTT--CGGTCATCTTCAAGTTGCTTGCCGGCAAATATTAGACGTTGTTGGTCAGGTG 15461 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTC 34338 | | || ||| ||||| || ||||| ||| | | | || || || | | ||| Sbjct 15460 GGATGCCCTCTTTGTC--CTGGATTTTGGACTTAATGTTGTTGATTGAGTCAGATGGTTC 15403 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| |||| || || || |||||||| | ||||| || || ||||||||| Sbjct 15402 GACTTCCATGGTTATCGTCTTGCCGGTTAAGGTTTTAACGAATATCTGCATC 15351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321860370963200