Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq31228 102 6e-17 seq150073 100 2e-16 seq35076 98.7 8e-16 seq9218 87.8 1e-12 seq279023 86.0 5e-12 seq2831 86.0 5e-12 >seq31228 Length=3734 Score = 102 bits (112), Expect = 6e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 18132 GATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCA 18191 || || || ||||||||||||||||||| || || ||| |||| || || || || Sbjct 2898 GACTCCTTCTGAATGTTGTAGTCGGCCAGGGTACGACCATCCTCCAGCTGCTTTCCTGCG 2957 Query 18192 TAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT-CGGCAATTTGTTGCTTGAC 18250 |||| | ||||| ||||| ||| | ||||||||| | | | | |||| | ||| || Sbjct 2958 AAGATCAACCTTTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGT-CTTCAC 3016 Query 18251 CTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTT 18310 | ||| ||||||| | |||| ||||| ||||||| | || ||||| | || || Sbjct 3017 ATTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCGGTAAGGGTCTT 3076 Query 18311 TACAAAAATTTGCAT 18325 ||||||||| ||||| Sbjct 3077 TACAAAAATCTGCAT 3091 >seq150073 Length=1124 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || ||||| |||||||| || ||||| ||| Sbjct 284 CCACCACGGAGACGAAGGACAAGGTGGAGGGTCGATTCCTTTTGAATATTATAGTCAGCC 225 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| ||||| || || || ||| |||| | ||||| ||||| || Sbjct 224 AAGGTGCGGCCATCCTCCAACTGCTTTCCTGCAAAGATCAACCTTTGCTGATCTGGCGGG 165 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | | |||||| | | | ||| ||| | ||| | Sbjct 164 ATCCCTTCCTTATCCTGTATCTTTGTCTTGACATTATCGATAGTATCAGAGCTCTCCACT 105 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| |||| || ||||| ||||| ||||||||||||||| Sbjct 104 TCTAAGGTGATAGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCATT 57 >seq35076 Length=3390 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || || ||||| || ||||||||||| |||| || | ||| Sbjct 1406 AGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCC 1465 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||| || || ||| |||| || ||||| || ||| || | ||||||||||| Sbjct 1466 TCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCTTCCTTATCC 1525 Query 18234 GCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| ||| | ||||| | ||| ||||| | ||| ||||| ||||||| | Sbjct 1526 TGAATCTTGGT-TTTGACATTATCAATGGTGTCTGAGCTCTCAACTTCAAGGGTGATGGT 1584 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||||| ||||| |||||||| ||||| Sbjct 1585 TTTCCCGGTCAGCGTTTTGACAAAAATCTGCAT 1617 >seq9218 Length=18002 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || || || || || ||||| ||||| || || | || | || Sbjct 14901 AAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGCTAGGGTACGCCCGTC 14960 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||||||| || ||| |||| | ||| || ||||| ||| | ||||||||||| Sbjct 14961 TTCCAATTGTTTCCCGGCAAAGATCAATCTCTGCTGATCTGGGGGAATCCCTTCCTTATC 15020 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| |||||| | ||| ||| ||| | ||| || | |||||| | Sbjct 15021 TTGAATTTTCGTCTTGACATTGTCAATAGTATCAGAGCTCTCCACCTCCAAAGTGATGGT 15080 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || ||||| || ||||| Sbjct 15081 CTTCCCGGTCAAAGTCTTAACAAATATCTGCAT 15113 >seq279023 Length=610 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || |||||||| |||||||| |||||||| || Sbjct 397 CCACCACGAAGACGAAGAACAAGGTGGAGGGTTGATTCCTTTTGAATATTGTAGTCAGCT 338 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| ||||| || || || ||| |||| | ||||| ||||| || Sbjct 337 AAAGTGCGGCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCTTTGCTGATCTGGTGGG 278 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | | ||| || | ||| ||| ||| | ||| | Sbjct 277 ATCCCTTCCTTATCCTGTATCTTTGTCTTAACATTGTCAATAGTATCAGAGCTCTCCACT 218 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| || | || ||||| | ||||| || ||||||||||| Sbjct 217 TCTAGGGTAATAGTCTTCCCGGTAAGGGTTTTCACGAAAATTTGCAT 171 >seq2831 Length=23904 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||| || ||||| |||||||| ||||| || ||| Sbjct 5890 CCGCCACGAAGACGAAGGACAAGATGAAGAGTGGATTCCTTTTGAATATTGTAATCAGCC 5831 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| || || ||| | || || || || ||||| || Sbjct 5830 AAGGTACGCCCATCTTCCAATTGCTTTCCTGCAAATATCAGCCTCTGCTGATCTGGAGGA 5771 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | ||| || | ||| ||||| | ||| Sbjct 5770 ATACCTTCCTTGTCTTGTATCTTCGTCTTCACATTATCAATGGTGTCGGAGCTCTCCACC 5711 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | |||||||||||||| || ||||| || ||||| Sbjct 5710 TCCAAGGTGATGGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 5664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377921331971400