Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq3724 111 1e-19 seq11074 100 2e-16 seq59535 89.7 4e-13 >seq3724 Length=15214 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 24826 AACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA 24885 || || ||||||||||| || ||||||||||||||||| || |||||| | || |||||| Sbjct 4481 AAGATGATGCAGATATTCGTGAAAACCTTAACCGGCAAGACAATAACCATGGAAGTCGAA 4422 Query 24886 TCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTT 24945 || ||| | | | ||||| ||||| | ||||||||| | || | Sbjct 4421 CCGTCTGACTCGATCAACAACATTAAGTCCAAAATCCAGGACAAAGAAGGCATCCCACCT 4362 Query 24946 GACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGAT 25005 |||||||||||| | |||| ||| ||||| ||||| |||||| || ||| | || Sbjct 4361 GACCAGCAACGTCTTATATTTGCAGGCAAGCAACTTGAAGATGACAGGACCGTAGCAGAC 4302 Query 25006 TACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 |||| || ||||| ||| |||| || || | || |||| | ||||| ||| Sbjct 4301 TACAATATCCAGAAGGAGTCCACTCTCCACCTCGTCCTACGCCTTCGCGGTGGT 4248 >seq11074 Length=8391 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || |||||| |||| |||||||| |||||| | || || ||||| Sbjct 481 ATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAATCATCA 540 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || || || | ||||||||| | || ||| || Sbjct 541 GACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCTGATCAA 600 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | ||| || |||||||| |||||| ||| | |||||||| Sbjct 601 CAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAGCCGATTACAAT 660 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || |||||||| | || |||||| | || ||||| | ||||| ||| Sbjct 661 ATCCAGAAAGAATCTACTCTTCATCTTGTTTTACGTCTTCGCGGCGGT 708 >seq59535 Length=2228 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| ||||||||||||| || ||| |||| || ||||| | Sbjct 1751 ATGCAGATCTTCGTAAAAACCCTAACCGGCAAAACAATCACCCTCGAGGTTGAATCCTCC 1692 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || ||||| | |||||||| | || ||||| Sbjct 1691 GACACAATCGACAATGTCAAAACCAAAATCCAAGACAAAGAAGGAATCCCACCAGACCAA 1632 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| |||| | || || |||||||| |||||| | || | ||| |||| | Sbjct 1631 CAACGTCTAATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACCCTCGCCGACTACAAC 1572 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||| || |||| || ||| | || | || | ||||| || Sbjct 1571 ATCCAGAAGGAATCCACTCTCCATCTCGTCCTCCGTCTTCGCGGTGG 1525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416735218822400