Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2381 199 5e-46 seq33024 141 1e-28 seq80314 122 1e-22 seq100015 96.9 4e-15 seq6823 91.5 2e-13 >seq2381 Length=21385 Score = 199 bits (220), Expect = 5e-46 Identities = 577/878 (66%), Gaps = 19/878 (2%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || || || || || || ||||| |||||||| || |||| || ||||| Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| |||||||||| || ||||||||||||| || ||||||| || || | Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || ||||| || || || || ||||| |||||| || | ||||| || | | Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 33471 TTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || | || | | |||| || ||| || || || ||||| | | || | Sbjct 13862 GCACACGGTAACGCGTCACA--AACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTA 13919 Query 33529 TAAATCTAACGGTTTCTTCACTCGG-TGGATGT--AATAAAT-GTTTAAACATCAAACAT 33584 || | | || | || || |||| | | | |||| | || ||| ||||||| Sbjct 13920 TACTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGAGAGTATAA----CAAACAT 13975 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 ||||||||||| || || || ||||||| | |||||| |||||||| || || ||||| Sbjct 13976 GCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCA 14035 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||||| ||||||||||| ||||| ||||| | ||| ||| || ||||| || Sbjct 14036 GGCATTAAACCACGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATC 14095 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGTATCC 33762 ||||| || |||||| ||||| | || |||| | || || | | | ||||||| Sbjct 14096 CCTTCAACACAAGCAAATGCAATTATTCGCTCTGC--AAACGATTCCGAACCGTGTATCC 14153 Query 33763 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33822 | | |||||||| ||||| || ||| || |||||||| | ||| ||||| Sbjct 14154 AGCGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAAGA 14213 Query 33823 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33882 || |||||| ||||| || ||| ||||| | | ||| ||||||||| | Sbjct 14214 GACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTCGG 14273 Query 33883 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 33942 ||||||||||||| || || || || || ||||| || | || || | | || | Sbjct 14274 AATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCACGCGCTTCAGGGAGTTGGA 14333 Query 33943 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAA 34002 || | || || || | |||||| || || || ||| ||| ||||| | Sbjct 14334 TCTCCTTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAAAGA 14393 Query 34003 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT---TCCAATCAT 34059 | || | || || | || || | || || || || ||| | | ||| | Sbjct 14394 AGGCGAGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGTGTC 14453 Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 || ||| |||| || |||||||| | ||||| || ||||| || || || || | Sbjct 14454 GGAGATCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGT 14513 Query 34120 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 |||| | |||||| | | | |||| ||||||||| ||| Sbjct 14514 ACATTTCCCAGATTTGAGGGTATTTGATTGGGAACATA 14551 >seq33024 Length=3557 Score = 141 bits (156), Expect = 1e-28 Identities = 577/907 (64%), Gaps = 7/907 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || || || || || ||||||||||||||||| ||||| | ||| || || | Sbjct 1029 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAAT 1088 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||||||||| | ||| ||||| ||| || || || || | | Sbjct 1089 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1148 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA-- 33468 || ||||| || || ||||| ||||| |||| | || | |||||| || | | Sbjct 1149 AACCTATCAGCAACAAATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCAAC 1208 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || || || || || || ||| || || || ||||| | || | || Sbjct 1209 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCGATTTCCACCGCCTCTGAAACAA 1266 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 | | ||| || ||||||| || || | ||| |||||| |||| Sbjct 1267 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1326 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 |||| ||||| | |||||||||| | ||| || ||||| || || || || || |||| Sbjct 1327 AATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCCGGCA 1386 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 ||| || || || || ||||||||||| | ||| ||| || ||||| || |||| Sbjct 1387 TTAATCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTT 1446 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTT 33768 | || ||| || || | || || ||| | ||| | | | | | ||||| Sbjct 1447 CAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCGTCGATCCAGCGCA 1506 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 |||||||| ||||| || ||| || || || || | ||| || | | Sbjct 1507 AGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAATAAACCCG 1566 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 |||||| | ||| |||| ||||| || | || | |||||||| ||||| | Sbjct 1567 ATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCGGAATGGA 1626 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948 | ||||| || || || ||||| ||||| || ||| || || | || || ||||| Sbjct 1627 TATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGAACTTCCT 1686 Query 33949 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 | || || || | ||| || ||| || || ||| || || || || || | Sbjct 1687 TCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAGAAGGCGA 1746 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT---TCCAATCATTGATAT 34065 || || | || |||| ||| || | || || | | ||| | | | || Sbjct 1747 GCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGACGTAAAT 1806 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 | ||||| ||| |||||||| | ||||| || || || || || ||||| ||||| | Sbjct 1807 CGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATTT 1866 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGA 34185 |||||| | | ||| ||||||||| || |||| || ||| ||||| || || | Sbjct 1867 CCCAGATTTGGGGGAATTTGATTGGGAACATGCAGAATCGATCTGGGTTTGGGGCGAGTA 1926 Query 34186 TAGGTTC 34192 ||||| Sbjct 1927 AGGGTTC 1933 >seq80314 Length=1716 Score = 122 bits (134), Expect = 1e-22 Identities = 305/456 (67%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || || || | ||||| ||||| |||||||| || |||| ||| ||||| Sbjct 1261 TTCTGATACTCCCCAATCCGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAAC 1202 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| |||||||||| || || |||||||||| || ||||||| || || | Sbjct 1201 TCCATCCAATCAAACGGGTTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 1142 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || ||||| || || || || ||||| |||||| || | ||||| || | | Sbjct 1141 AACCTATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAAC 1082 Query 33471 TTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || | || | | |||| || ||| || || || ||||| | | || | Sbjct 1081 GCACACGGTAACGCGTCACA--AACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTA 1024 Query 33529 TAAATCTAACGGTTTCTTCACTCGG-TGGATGT--AATAAAT-GTTTAAACATCAAACAT 33584 || | || | || || || | | | | || | | || ||| |||||| Sbjct 1023 TACTCTTTACCCTCTCCTCGCTGGTCTTCTTCTTCAACAGAGAGTATAA----CAAACAC 968 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 ||||||||||| || || || ||||||| | |||||| || ||||| || || ||||| Sbjct 967 GCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCA 908 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||||| || |||||||| ||||| ||||| | | || ||| || ||||| | | Sbjct 907 GGCATTAAACCTCGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAGAAGAATACT 848 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33740 ||||| || |||||| ||||| | || |||| || Sbjct 847 CCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA 812 >seq100015 Length=1511 Score = 96.9 bits (106), Expect = 4e-15 Identities = 320/496 (65%), Gaps = 4/496 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || || || || || ||||||||||||||||| || || | ||| || || | Sbjct 937 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTCCCCTGCAACGAAATCAAT 996 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||||||||| | ||| ||||| ||| || || || || | | Sbjct 997 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1056 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA-- 33468 || ||||| || || || || ||||| |||||| || | |||||| || | | Sbjct 1057 AACCTATCAGCAACAAACTCAATATACTGACTCATCAACTCTCCATTCATCCCAACCAAC 1116 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || || || || || || ||| || ||||| || || | | | || Sbjct 1117 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCAATTTCCACTGCCTCCGAAACAA 1174 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 | | ||| || ||||||| || || | ||| |||||| |||| Sbjct 1175 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1234 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 | || ||||| | |||||||||| | ||| || ||||| || || || || || |||| Sbjct 1235 AGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCA 1294 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 ||| || || || || ||||||||||| | ||| ||| || ||||| || |||| Sbjct 1295 TTAACCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTT 1354 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTT 33768 | || ||| || || | || || ||| | ||| | | | ||| ||||| Sbjct 1355 CAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCATCAATCCAGCGCA 1414 Query 33769 GAGCCCAATCGGCCTT 33784 |||||||||||||| Sbjct 1415 AGGCCCAATCGGCCTT 1430 >seq6823 Length=41093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 ||||||| ||||| || |||||||| |||||| ||| ||| | | | ||| || Sbjct 35549 CATATGTTTCATAAGGGCCTTCCTTGGCAGCTAATTTGCAAGATGTTTTGAGAGCATGGT 35608 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG-A 62744 ||||||| || ||||| || | ||| || | | ||| || || || |||||| || | Sbjct 35609 AATAAATTGTCTCAAATATGTCCTTGTTCAACTGTTGGGCCTCAGGTGAATCAAAAGGCA 35668 Query 62745 TAATT--TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | | ||||| |||| | || |||| ||||||| ||||||||||| |||| || Sbjct 35669 TGCCTAGTAAGA---TAAAGGTATCTGCTAGGCCTTGAATTCCAATACCGATTGGTCGAT 35725 Query 62803 GTCTCTTATTAGA---GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62859 ||||| | || || || ||| ||| || || || |||| | ||| || |||| Sbjct 35726 GTCTCATGTTTGATCTTCTTGCAGTTTC---AACTGGGTAGAAATTGACATCAATTATTT 35782 Query 62860 TATTGAGATTTCTG 62873 | || |||||| || Sbjct 35783 TGTTCAGATTTGTG 35796 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || || || || | ||| || ||||| || |||||||| | | ||| | || | Sbjct 37526 GTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAAACCACCTCTGAGACATATAATGG 37585 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || ||| ||||| || | |||| | ||| || || |||||||| || | ||||| Sbjct 37586 TAAGTTGAAATGGCTGAATCAACATCCTCCTTG-TGGATGCCTACTGCAACTCTCATTAT 37644 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| || ||||| || |||| || || | ||||||| ||| || | || | Sbjct 37645 CATGTGTTGTGGTCTCTCCACAACCTTCCCATTGACCTTCAACAGGTATGACCTCTCAAG 37704 Query 63842 AGTTTTAAAACCAAAATA 63859 ||||| ||||||||||| Sbjct 37705 GGTTTTGAAACCAAAATA 37722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627395006601600