Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2381 192 8e-44 seq33024 127 3e-24 seq80314 111 2e-19 seq100015 98.7 1e-15 seq6823 84.2 3e-11 >seq2381 Length=21385 Score = 192 bits (212), Expect = 8e-44 Identities = 433/640 (68%), Gaps = 22/640 (3%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || || || || || || || || ||||| |||||||| || |||| | ||||| Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| || || || ||||||| |||| || ||||||| || || | Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 || ||||| || ||||| || ||||| |||||| || | ||||| || | | Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 36047 TTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | || | || | | |||| || ||| || || || ||||| || | || | Sbjct 13862 GCACACGGTAACGCGTCACA--AACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTA 13919 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGATAC---AATAAAT-GTTTAAACATCAAACAT 36160 || | | ||| | || || |||| | | |||| | || ||| ||||||| Sbjct 13920 TACTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGAGAGTATAA----CAAACAT 13975 Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 ||||||||||| || || || ||||||| | |||||| ||||| || || || ||||| Sbjct 13976 GCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCA 14035 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAAT 36279 ||||||| ||||||||||| ||||| ||||| | |||| || |||||| ||||| || Sbjct 14036 GGCATTAAACCACGCTTTTTCAGCCAGAATATAG-CGCAGAAGCTTCCAGAGAAGAATAT 14094 Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCATGTA 36335 ||||| || ||||| ||||| | || |||| || ||| | | || | |||| Sbjct 14095 CCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA-AACGATTCCGAAC---CGTGTA 14150 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 |||| | |||||||| ||||| || ||| || || || || | |||| || Sbjct 14151 TCCAGCGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAA 14210 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 ||||| |||||| ||||| || ||| ||||||| | ||| |||||||| Sbjct 14211 AGAGACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTT 14270 Query 36456 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 | |||||||||||||| || || ||||| || ||||| || Sbjct 14271 CGGAATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAA 14310 >seq33024 Length=3557 Score = 127 bits (140), Expect = 3e-24 Identities = 370/564 (66%), Gaps = 7/564 (1%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| |||||| |||||||| ||||||| |||||||||| | ||| || ||||| || | Sbjct 1312 ACAACAAACAGGCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1371 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | || || || ||||||| || || || || ||||||||||| | |||| || |||| Sbjct 1372 AGGTAAGCCCCGGCATTAATCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCA 1430 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || ||||| || ||||| || || || || | || || ||| | ||| | | | Sbjct 1431 GAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCG 1490 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | | ||||| |||||||| ||||| || ||| || || ||||| | | Sbjct 1491 CCGTCGATCCAGCGCAAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACA 1550 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT-CAATCAAAAGACT 36447 ||| || | | |||||| | ||| |||| || || | |||| | ||| Sbjct 1551 GCACGGAATAAACCCGATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAG-GA 1609 Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 |||||||| ||||| || ||||| || || |||||||| ||||| || ||| || || Sbjct 1610 GTACATTTCGGAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTC 1669 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 | || || ||||| | || || || | ||| || ||| || |||||| Sbjct 1670 AGGAAGTTGAACTTCCTTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGA 1729 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTAT- 36626 || || || || || | || || | || |||| ||| | | || || | | Sbjct 1730 TGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTC 1789 Query 36627 --TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 ||| | | | ||| ||||| ||| |||||||| | ||||| || || || || Sbjct 1790 GGACCAGTGACGTAAATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTC 1849 Query 36685 TGCCTTTTTATACATATTCCAGAT 36708 || ||||| ||||| | |||||| Sbjct 1850 GGCTTTTTTGTACATTTCCCAGAT 1873 >seq80314 Length=1716 Score = 111 bits (122), Expect = 2e-19 Identities = 305/458 (67%), Gaps = 16/458 (3%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || || || || || | ||||| ||||| |||||||| || |||| || ||||| Sbjct 1261 TTCTGATACTCCCCAATCCGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAAC 1202 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| || || || | ||||| |||| || ||||||| || || | Sbjct 1201 TCCATCCAATCAAACGGGTTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 1142 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 || ||||| || ||||| || ||||| |||||| || | ||||| || | | Sbjct 1141 AACCTATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAAC 1082 Query 36047 TTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | || | || | | |||| || ||| || || || ||||| || | || | Sbjct 1081 GCACACGGTAACGCGTCACA--AACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTA 1024 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGA----TACAATAAAT-GTTTAAACATCAAACA 36159 || |||| | || || || ||| | ||| | | || ||| |||||| Sbjct 1023 TACTCTTTACCCTCTCCTCGCT-GGTCTTCTTCTTCAACAGAGAGTATAA----CAAACA 969 Query 36160 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 36219 ||||||||||| || || || ||||||| | |||||| || || || || || ||||| Sbjct 968 CGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCC 909 Query 36220 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAA 36278 ||||||| || |||||||| ||||| ||||| | | || || |||||| ||||| | Sbjct 908 AGGCATTAAACCTCGCTTTTTCAGCCAGAATATAG-CACATAAACTTCCAGAGAAGAATA 850 Query 36279 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 36316 |||||| || ||||| ||||| | || |||| || Sbjct 849 CTCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA 812 >seq100015 Length=1511 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| |||||| ||||| || ||||||| |||||||||| | ||| || ||||| || | Sbjct 1220 ACAACAAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1279 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | || || || ||||||| || || || || ||||||||||| | |||| || |||| Sbjct 1280 AGGTAAGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCA 1338 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || ||||| || ||||| || || || || | || || ||| | ||| | | | Sbjct 1339 GAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCG 1398 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 ||| ||||| |||||||||||||| || ||| || || ||||| | | Sbjct 1399 CCATCAATCCAGCGCAAGGCCCAATCGGCCTTGCGCTTGACAGCGGGGATAGTCTCAACA 1458 Query 36389 GCA 36391 ||| Sbjct 1459 GCA 1461 >seq6823 Length=41093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || || | ||| || ||||| || |||||||| | | ||| | || | Sbjct 37526 GTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAAACCACCTCTGAGACATATAATGG 37585 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || ||| ||||| || | |||| | ||| || || |||||||| || | ||||| Sbjct 37586 TAAGTTGAAATGGCTGAATCAACATCCTCCTTG-TGGATGCCTACTGCAACTCTCATTAT 37644 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||| || ||||| || || | ||| || | ||||||| ||| || | || | Sbjct 37645 CATGTGTTGTGGTCTCTCCACAACCTTCCCATTGACCTTCAACAGGTATGACCTCTCAAG 37704 Query 66635 AGTTTTAAAACCAAAATA 66652 ||||| ||||||||||| Sbjct 37705 GGTTTTGAAACCAAAATA 37722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655641138324800