Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2381 205 1e-47 seq33024 163 4e-35 seq80314 114 2e-20 seq100015 104 3e-17 seq6823 89.7 7e-13 >seq2381 Length=21385 Score = 205 bits (226), Expect = 1e-47 Identities = 577/877 (66%), Gaps = 17/877 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || || || || ||||| |||||||| || |||| || ||||| Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| |||||||||| || |||||||| |||| || ||||||| || || | Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 || |||||||| ||||| || ||||| |||||| || | ||||| || | | Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | || | || || || ||| || || || ||||| || | || ||| Sbjct 13862 GCACACGGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATA 13921 Query 49909 GATCTAACGGTTTCTTCACTCGGTGGATGC---AATAAAT-GTTTAAACATCAAACATGC 49964 | | || | || || |||| | | |||| | || ||| ||||||||| Sbjct 13922 CTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGAGAGTATAA----CAAACATGC 13977 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 ||||||||| || || || ||||||| | ||||| ||||| || || || ||||| || Sbjct 13978 GAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGG 14037 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTC 50083 ||||| ||||||||||| ||||| ||||| | |||| || ||||| ||||| || | Sbjct 14038 CATTAAACCACGCTTTTTCAGCCAGAATATAG-CGCAGAAGCTTCCAGAGAAGAATATCC 14096 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC--TGGCGCTGTCATGTATCCA 50141 |||| || ||||| |||| | || |||| || ||| | || | |||||||| Sbjct 14097 CTTCAACACAAGCAAATGCAATTATTCGCTCTGCA-AACGATTCCG-AACCGTGTATCCA 14154 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 | |||||||| ||||| || ||| || |||||||| | ||| |||||| Sbjct 14155 GCGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAAGAG 14214 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 | |||||| ||||| || ||| ||||| | | ||| ||||||||| || Sbjct 14215 ACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTCGGA 14274 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 |||||||||||| || || || || || ||||| || | || || | | || | Sbjct 14275 ATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCACGCGCTTCAGGGAGTTGGAT 14334 Query 50322 TTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 50381 || | || || ||| | |||||| || || |||||| ||| ||||| || Sbjct 14335 CTCCTTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAAAGAA 14394 Query 50382 CGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT---TCCAATCATT 50438 || | || || | || || || || | ||| || ||| | | ||| | Sbjct 14395 GGCGAGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGTGTCG 14454 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 || ||| |||| || |||||||| | ||||| || ||||| || || || || || Sbjct 14455 GAGATCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTA 14514 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||| | |||||| | | | |||| ||||||||| ||| Sbjct 14515 CATTTCCCAGATTTGAGGGTATTTGATTGGGAACATA 14551 >seq33024 Length=3557 Score = 163 bits (180), Expect = 4e-35 Identities = 584/908 (64%), Gaps = 9/908 (1%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || || || ||||||||||||||||| ||||| | ||| || || | Sbjct 1029 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAAT 1088 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| | ||| |||| ||| || || || || | | Sbjct 1089 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1148 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA-- 49846 || ||||| || |||||||| ||||| |||| | || | |||||| || | | Sbjct 1149 AACCTATCAGCAACAAATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCAAC 1208 Query 49847 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 | || || || || || || ||| || || || ||||| |||| | || Sbjct 1209 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCGATTTCCACCGCCTCTGAAACAA 1266 Query 49907 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 49966 | | ||| || ||||||| || || | ||| |||||| |||| Sbjct 1267 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1326 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 |||| ||||| | |||||||||| | ||| | ||||| || || || || || |||| Sbjct 1327 AATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCCGGCA 1386 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCT 50085 ||| || || || || ||||||||||| | |||| || ||||| ||||| || ||| Sbjct 1387 TTAATCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGAATATCCCT 1445 Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTT 50145 || || || || || |||| || ||| | |||| | | | | | ||||| Sbjct 1446 TCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCGTCGATCCAGCGC 1505 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205 |||||||| ||||| || ||| || || || || | ||| || | | Sbjct 1506 AAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAATAAACCC 1565 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 |||||| | ||| |||| ||||| || | || | |||||||| ||||| Sbjct 1566 GATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCGGAATGG 1625 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || ||||| || || || ||||| ||||| || ||| || || | || || ||||| Sbjct 1626 ATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGAACTTCC 1685 Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385 | || || ||| | ||| || ||| || |||||| || || || || || Sbjct 1686 TTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAGAAGGCG 1745 Query 50386 AATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT---TCCAATCATTGATA 50442 | || || | || ||||| ||| | || || || | | ||| | | | | Sbjct 1746 AGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGACGTAAA 1805 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 50502 || ||||| ||| |||||||| | ||||| || || || || || ||||| ||||| Sbjct 1806 TCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATT 1865 Query 50503 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGG 50562 | |||||| | | ||| ||||||||| || |||| || ||| ||||| || || Sbjct 1866 TCCCAGATTTGGGGGAATTTGATTGGGAACATGCAGAATCGATCTGGGTTTGGGGCGAGT 1925 Query 50563 ATCGGTTC 50570 | ||||| Sbjct 1926 AAGGGTTC 1933 >seq80314 Length=1716 Score = 114 bits (126), Expect = 2e-20 Identities = 358/545 (66%), Gaps = 22/545 (4%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || | ||||| ||||| |||||||| || |||| ||| ||||| Sbjct 1261 TTCTGATACTCCCCAATCCGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAAC 1202 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| |||||||||| || || ||||| |||| || ||||||| || || | Sbjct 1201 TCCATCCAATCAAACGGGTTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 1142 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 || |||||||| ||||| || ||||| |||||| || | ||||| || | | Sbjct 1141 AACCTATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAAC 1082 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | || | || || || ||| || || || ||||| || | || ||| Sbjct 1081 GCACACGGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATA 1022 Query 49909 GATCTAACGGTTTCTTCACTCGGTGGA----TGCAATAAAT-GTTTAAACATCAAACATG 49963 | || | || || || ||| | ||| | | || ||| |||||| | Sbjct 1021 CTCTTTACCCTCTCCTCGCT-GGTCTTCTTCTTCAACAGAGAGTATAA----CAAACACG 967 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 |||||||||| || || || ||||||| | ||||| || || || || || ||||| | Sbjct 966 CGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCAG 907 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATT 50082 |||||| || |||||||| ||||| ||||| | | || || ||||| ||||| | | Sbjct 906 GCATTAAACCTCGCTTTTTCAGCCAGAATATAG-CACATAAACTTCCAGAGAAGAATACT 848 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC-----TGGCGCTGTCATGTA 50137 ||||| || ||||| |||| | || |||| || ||| || | | |||| | Sbjct 847 CCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA-AACAATTATGAC-CCGTCA---A 793 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 |||| | |||||||| ||||| || ||| || |||||||||| ||| || Sbjct 792 TCCAACGTAAGGCCCAATCAGCCTTACGCTTGACAGCCGGAATCGTTTCTACAGCACGAA 733 Query 50198 AGAGA 50202 | ||| Sbjct 732 ACAGA 728 >seq100015 Length=1511 Score = 104 bits (114), Expect = 3e-17 Identities = 324/497 (65%), Gaps = 6/497 (1%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || || || ||||||||||||||||| || || | ||| || || | Sbjct 937 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTCCCCTGCAACGAAATCAAT 996 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| | ||| |||| ||| || || || || | | Sbjct 997 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1056 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA-- 49846 || ||||| || ||||| || ||||| |||||| || | |||||| || | | Sbjct 1057 AACCTATCAGCAACAAACTCAATATACTGACTCATCAACTCTCCATTCATCCCAACCAAC 1116 Query 49847 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 | || || || || || || ||| || ||||| || || || | | || Sbjct 1117 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCAATTTCCACTGCCTCCGAAACAA 1174 Query 49907 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 49966 | | ||| || ||||||| || || | ||| |||||| |||| Sbjct 1175 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1234 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 | || ||||| | |||||||||| | ||| | ||||| || || || || || |||| Sbjct 1235 AGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCA 1294 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCT 50085 ||| || || || || ||||||||||| | |||| || ||||| ||||| || ||| Sbjct 1295 TTAACCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGAATATCCCT 1353 Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTT 50145 || || || || || |||| || ||| | |||| | | | ||| ||||| Sbjct 1354 TCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCATCAATCCAGCGC 1413 Query 50146 TGAGCCCAATCGGCCTT 50162 |||||||||||||| Sbjct 1414 AAGGCCCAATCGGCCTT 1430 >seq6823 Length=41093 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | ||| || ||||| || |||||||| | | ||||| || | Sbjct 37526 GTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAAACCACCTCTGAGACATATAATGG 37585 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || ||| ||||| || | |||| | ||| || || ||||| || || | ||||| Sbjct 37586 TAAGTTGAAATGGCTGAATCAACATCCTCCTTG-TGGATGCCTACTGCAACTCTCATTAT 37644 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| || ||||| || || | ||| ||| | ||||||| ||| || | || | Sbjct 37645 CATGTGTTGTGGTCTCTCCACAACCTTCCCATTGACCTTCAACAGGTATGACCTCTCAAG 37704 Query 80514 AGTTTTAAAACCAAAATA 80531 ||||| ||||||||||| Sbjct 37705 GGTTTTGAAACCAAAATA 37722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715505979060800