Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq9218 122 7e-23 seq11074 96.9 3e-15 seq31228 82.4 6e-11 >seq9218 Length=18002 Score = 122 bits (134), Expect = 7e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| |||||| || | ||||||||| | | ||||| |||| || Sbjct 14676 CACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGCTAGGGTACGCCCGTCTTC 14735 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||||||||| |||||||| ||||||| ||| ||||| | || | |||||||| || Sbjct 14736 CAATTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATCCCTTCTTTATCCTG 14795 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| || || || ||| ||||| | ||| ||||| || | || ||||||| Sbjct 14796 GATCTTTGTCTTCACATTGTCAATGGTGTC-CGAGCTTTCGACTTCCAGGGTAATAGTTT 14854 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || |||||||| || || ||||| ||||| Sbjct 14855 TCCCAGTTAGAGTCTTGACGAAAATCTGCAT 14885 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| |||||| || | ||||||||| | | ||||| |||| || Sbjct 14904 CACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGCTAGGGTACGCCCGTCTTC 14963 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||||||||| |||||||| ||||||| ||| ||||| | || | ||||| || || Sbjct 14964 CAATTGTTTCCCGGCAAAGATCAATCTCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 15023 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 || | ||||| || ||| || || ||| ||| || || | || || || | Sbjct 15024 AATTTTCGTCTTGACATTGTCAATAGTATC-AGAGCTCTCCACCTCCAAAGTGATGGTCT 15082 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| | ||| || ||||| || ||||| Sbjct 15083 TCCCGGTCAAAGTCTTAACAAATATCTGCAT 15113 >seq11074 Length=8391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | ||| || | ||| | ||| || || || | ||||||||||| Sbjct 707 CCGCCGCGAAGACGTAAAACAAGATGAAGAGTAGATTCTTTCTGGATATTGTAATCGGCT 648 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | |||||| || ||||| || | || |||||||| | || Sbjct 647 AAAGTACGACCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 588 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||||| || | | |||||| | || || Sbjct 587 ATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCTGATGATTCAACT 528 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 |||| ||||| ||||| || ||||| |||||||| || || |||||||| || Sbjct 527 TCTAGGGTTATTGTTTTGCCAGTTAGGGTTTTCACGAATATCTGCATTTTTTT 475 >seq31228 Length=3734 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 42913 GTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCG 42972 || ||||||||||| | || || || | ||| ||||| |||| |||| || || || Sbjct 3351 GTACTCTCCTTTTGGATGTTATAGTCTGCCAAAGTACGGCCGTCCTCCAGCTGCTTACCA 3410 Query 42973 GCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTT 43030 ||||| || | | || ||||| | || | ||| || || || |||| | |||| Sbjct 3411 GCAAAGATGAGCCTTTGCTGATCTGGAGGAATACCCTCCTTATC-CTGAATTTTGGTCTT 3469 Query 43031 TGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGA 43089 ||| || ||| |||||| | ||| |||||| || | || || || ||||| || || Sbjct 3470 -GACATTGTCAATTGTGTC-CGAGCTCTCGACCTCAAGGGTAATGGTCTTTCCAGTCAGG 3527 Query 43090 GTTTTCACAAAAATTTGCAT 43109 |||||||||||||| ||||| Sbjct 3528 GTTTTCACAAAAATCTGCAT 3547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379939335287760