Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2381 214 2e-50 seq33024 136 5e-27 seq80314 125 1e-23 seq100015 91.5 2e-13 seq6823 84.2 3e-11 >seq2381 Length=21385 Score = 214 bits (236), Expect = 2e-50 Identities = 583/881 (66%), Gaps = 25/881 (3%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || || || || ||||| ||||||||||| |||| || ||||| Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| |||||||||| || |||||||| |||| || ||||||| || || | Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || ||||| || | || || ||||| |||||| || | ||||| || | | Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 41954 TTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || | || | | |||| || ||| || || || ||||| || | || | Sbjct 13862 GCACACGGTAACGCGTCACA--AACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTA 13919 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTGGATAC---AATAAAT-GTTTAAACATCAAACAT 42067 || | | ||| | || || |||| | | |||| | || ||| ||||||| Sbjct 13920 TACTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGAGAGTATAA----CAAACAT 13975 Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 ||||||||||| || || || || |||| | |||||| ||||| || || || ||||| Sbjct 13976 GCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCA 14035 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGAT 42186 ||||||| ||||||||||| ||||| ||||||| |||| || |||||| ||||| || Sbjct 14036 GGCATTAAACCACGCTTTTTCAGCCAGAATATAG-CGCAGAAGCTTCCAGAGAAGAATAT 14094 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCATGTA 42242 ||||| || ||||| ||||| | || |||| || ||| | | || | |||| Sbjct 14095 CCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA-AACGATTCCGAAC---CGTGTA 14150 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 |||| | |||||||| ||||| || ||| || |||||||| | ||| || Sbjct 14151 TCCAGCGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAA 14210 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTT 42362 ||||| |||||| ||||| || ||| ||||| | | ||| |||||||| Sbjct 14211 AGAGACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTT 14270 Query 42363 CTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCT 42422 | |||||||||||||| || || || || || ||||| || | || || | | | Sbjct 14271 CGGAATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCACGCGCTTCAGGGAGTT 14330 Query 42423 GTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAA 42482 | | || | || || ||| | ||||||| || || |||||| ||| |||| Sbjct 14331 GGATCTCCTTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAA 14390 Query 42483 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT---TCCAAT 42539 | || || | || || | || || | || || || || | | | | ||| | Sbjct 14391 AGAAGGCGAGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGT 14450 Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 || ||| |||| || |||||||| | ||||| || |||||||| || || | Sbjct 14451 GTCGGAGATCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCT 14510 Query 42600 TATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | ||||| | |||||| | | | |||| |||||||| ||| Sbjct 14511 TGTACATTTCCCAGATTTGAGGGTATTTGATTGGGAACATA 14551 >seq33024 Length=3557 Score = 136 bits (150), Expect = 5e-27 Identities = 578/908 (64%), Gaps = 9/908 (1%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || || || ||||||||||||||||||||||| | ||| || || | Sbjct 1029 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAAT 1088 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||||||||| | ||| |||| ||| || || || || | | Sbjct 1089 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1148 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA-- 41951 || ||||| || | ||||| ||||| |||| | || | |||||| || | | Sbjct 1149 AACCTATCAGCAACAAATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCAAC 1208 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || || || || || || ||| || || || ||||| |||| | || Sbjct 1209 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCGATTTCCACCGCCTCTGAAACAA 1266 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 | | || || ||||||| || || | ||| |||||| |||| Sbjct 1267 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1326 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 |||| ||||| | ||||| |||| | ||| || ||||| || || || || || |||| Sbjct 1327 AATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCCGGCA 1386 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCT 42190 ||| || || || || ||||||||||| | |||| || |||||| ||||| || ||| Sbjct 1387 TTAATCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGAATATCCCT 1445 Query 42191 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 42250 || || || || || | || || ||| | ||| | | | | | ||||| Sbjct 1446 TCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCGTCGATCCAGCGC 1505 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 |||||||| ||||| || ||| || || || || | ||| || | | Sbjct 1506 AAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAATAAACCC 1565 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 |||||| | ||| |||| || || || | || | |||||||| ||||| Sbjct 1566 GATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCGGAATGG 1625 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| || || || ||||| ||||| || ||| || || | || || ||||| Sbjct 1626 ATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGAACTTCC 1685 Query 42431 GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490 | || || ||| | ||| || ||| || |||||| || || || || || Sbjct 1686 TTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAGAAGGCG 1745 Query 42491 AATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT---TCCAATCATTGATA 42547 | || || | || |||| ||| || | || | | | ||| | | | | Sbjct 1746 AGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGACGTAAA 1805 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 || ||||| ||| |||||||| | ||||| || || ||||| || ||||| ||||| Sbjct 1806 TCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATT 1865 Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGG 42667 | |||||| | | ||| |||||||| || |||| || ||| ||||| || || Sbjct 1866 TCCCAGATTTGGGGGAATTTGATTGGGAACATGCAGAATCGATCTGGGTTTGGGGCGAGT 1925 Query 42668 ATCGGTTC 42675 | ||||| Sbjct 1926 AAGGGTTC 1933 >seq80314 Length=1716 Score = 125 bits (138), Expect = 1e-23 Identities = 362/544 (67%), Gaps = 20/544 (4%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || | ||||| ||||| ||||||||||| |||| ||| ||||| Sbjct 1261 TTCTGATACTCCCCAATCCGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAAC 1202 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| |||||||||| || || ||||| |||| || ||||||| || || | Sbjct 1201 TCCATCCAATCAAACGGGTTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 1142 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || ||||| || | || || ||||| |||||| || | ||||| || | | Sbjct 1141 AACCTATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAAC 1082 Query 41954 TTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || | || | | |||| || ||| || || || ||||| || | || | Sbjct 1081 GCACACGGTAACGCGTCACA--AACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTA 1024 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTGGA----TACAATAAAT-GTTTAAACATCAAACA 42066 || |||| | || || || ||| | ||| | | || ||| |||||| Sbjct 1023 TACTCTTTACCCTCTCCTCGCT-GGTCTTCTTCTTCAACAGAGAGTATAA----CAAACA 969 Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 ||||||||||| || || || || |||| | |||||| || || || || || ||||| Sbjct 968 CGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCC 909 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGA 42185 ||||||| || |||||||| ||||| ||||||| | || || |||||| ||||| | Sbjct 908 AGGCATTAAACCTCGCTTTTTCAGCCAGAATATAG-CACATAAACTTCCAGAGAAGAATA 850 Query 42186 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT--AT 42243 |||||| || ||||| ||||| | || |||| || ||| | || | || || Sbjct 849 CTCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA-AACAATTA-TGACCCGTCAAT 792 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| | |||||||| ||||| || ||| || |||||||||| ||| ||| Sbjct 791 CCAACGTAAGGCCCAATCAGCCTTACGCTTGACAGCCGGAATCGTTTCTACAGCACGAAA 732 Query 42304 GAGA 42307 ||| Sbjct 731 CAGA 728 >seq100015 Length=1511 Score = 91.5 bits (100), Expect = 2e-13 Identities = 278/425 (65%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || || || |||||||||||||||||||| || | ||| || || | Sbjct 937 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTCCCCTGCAACGAAATCAAT 996 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||||||||| | ||| |||| ||| || || || || | | Sbjct 997 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1056 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA-- 41951 || ||||| || | || || ||||| |||||| || | |||||| || | | Sbjct 1057 AACCTATCAGCAACAAACTCAATATACTGACTCATCAACTCTCCATTCATCCCAACCAAC 1116 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || || || || || || ||| || ||||| || || || | | || Sbjct 1117 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCAATTTCCACTGCCTCCGAAACAA 1174 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 | | || || ||||||| || || | ||| |||||| |||| Sbjct 1175 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1234 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 | || ||||| | ||||| |||| | ||| || ||||| || || || || || |||| Sbjct 1235 AGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCA 1294 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCT 42190 ||| || || || || ||||||||||| | |||| || |||||| ||||| || ||| Sbjct 1295 TTAACCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGAATATCCCT 1353 Query 42191 TCTAC 42195 || || Sbjct 1354 TCAAC 1358 >seq6823 Length=41093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || || || || | ||| || ||||| || |||||||| | | ||||| || | Sbjct 37526 GTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAAACCACCTCTGAGACATATAATGG 37585 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || ||| ||||| || | |||| | ||| || || ||||| || || | ||||| Sbjct 37586 TAAGTTGAAATGGCTGAATCAACATCCTCCTTG-TGGATGCCTACTGCAACTCTCATTAT 37644 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || || ||||| || || | ||| ||| | ||||||| ||| || | || | Sbjct 37645 CATGTGTTGTGGTCTCTCCACAACCTTCCCATTGACCTTCAACAGGTATGACCTCTCAAG 37704 Query 72597 AGTTTTAAAACCAAAATA 72614 ||||| ||||||||||| Sbjct 37705 GGTTTTGAAACCAAAATA 37722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668557663067200