Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq11074 122 9e-23 seq12130 109 6e-19 seq3724 96.9 4e-15 seq9871 95.1 1e-14 seq6823 95.1 1e-14 seq59535 91.5 1e-13 seq2675 91.5 1e-13 seq51823 89.7 5e-13 seq18408 89.7 5e-13 seq2831 89.7 5e-13 seq10696 86.0 6e-12 >seq11074 Length=8391 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| ||||| | ||||| ||||||||||| || || ||||||||| Sbjct 707 CCGCCGCGAAGACGTAAAACAAGATGAAGAGTAGATTCTTTCTGGATATTGTAATCGGCT 648 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| ||||||||||||||| |||| |||||||| ||||| || || Sbjct 647 AAAGTACGACCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 588 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || || ||| | | || | ||||| | | ||| ||| Sbjct 587 ATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCTGATGATTCAACT 528 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | ||||| |||||||| ||||| Sbjct 527 TCTAGGGTTATTGTTTTGCCAGTTAGGGTTTTCACGAATATCTGCAT 481 >seq12130 Length=7920 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || || || | || || || ||||| |||||||| ||| Sbjct 1192 GCCTCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 1251 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||||| ||||||||||||||| |||||| ||||||||| || || || Sbjct 1252 GAGGGTTCGGCCATCTTCAAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGGGG 1311 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||| ||| ||| | | || | ||||| | | || || Sbjct 1312 AATTCCCTCTTTGTCTTGAATCTTTGTTTTGACATTATCGATTGTGTCGGAGCTCTCAAC 1371 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| |||||||| || || ||||| |||||||| Sbjct 1372 CTCGAGAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 1419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || || | || || || ||||| |||||||| || Sbjct 5979 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCG 6038 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||||||||||||||| |||||| ||||||||| || || || Sbjct 6039 AGAGTTCGGCCGTCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 6098 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || ||||| | || | ||||| | || || Sbjct 6099 ATCCCCTCTTTGTCTTGAATCTTGGTTTTTACATTGTCGATTGTGTCGGAACTCTCAACC 6158 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| ||||| | || || ||||| |||||||| Sbjct 6159 TCGAGAGTGATTGTCTTTCCGGTAAGAGTCTTAACGAAGATTTGCAT 6205 >seq3724 Length=15214 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||| || || ||| | || ||||||||||| || || || |||||||||||| Sbjct 4321 TCTTCAAGTTGCTTGCCTGCAAATATAAGACGTTGCTGGTCAGGTGGGATGCCTTCTTTG 4380 Query 143090 TCGGTAATTTTTTGTTTTA-GCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||||| || | | |||| | || ||| | ||||| ||||| | || | Sbjct 4381 TCCTGGATTTTGGACTTAATGTTGTT-GATCGAGTCAGACGGTTCGACTTCCATGGTTAT 4439 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT-AGCTTATGTT 143194 ||||||||||| || ||||| |||||||| ||||| | ||| |||| Sbjct 4440 TGTCTTGCCGGTTAAGGTTTTCACGAATATCTGCATCATCTTGTGTT 4486 >seq9871 Length=9033 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| ||| | || | ||||||||||||||||||| Sbjct 951 GTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCGAGTTGTTTACCA 1010 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| ||||||||| || || || || ||||| || || ||||| ||| Sbjct 1011 GCGAAGATCAAACGTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTGGATTTTGGTTTTG 1070 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || || | ||| | ||||| ||||||| || Sbjct 1071 ACATTGTCGATTGTGTCGGAGCTCTCGACCTCGAGAGTAATTGTCTTTCCGGTCAGAGTC 1130 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 1131 TTAACGAAGATTTGCAT 1147 >seq6823 Length=41093 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 156871 AAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAttt 156930 ||| | ||| || | |||||||| ||||| ||||| || ||||| | ||| || ||| | Sbjct 35682 AAAGGTATCTGCTAGGCCTTGAATTCCAATACCGATTGGTCGATGTCTCATGTTTGATCT 35741 Query 156931 ttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977 | |||||||||||| |||||||||||| |||||| ||||| |||| Sbjct 35742 TCTTGCAGTTTCAACTGGGTAGAAATTGACATCAATTATTTTGTTCA 35788 >seq59535 Length=2228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || | ||| | || ||||| || || |||||||| ||| Sbjct 1524 GCCACCGCGAAGACGGAGGACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGC 1583 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||||||||||| || || |||| |||||||| || || || || Sbjct 1584 GAGGGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATTAGACGTTGTTGGTCTGGTGG 1643 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||| ||| | | || | ||||| | || ||| || Sbjct 1644 GATTCCTTCTTTGTCTTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAGGATTCAAC 1703 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || |||||||| | ||||||||||| || ||||| Sbjct 1704 CTCGAGGGTGATTGTTTTGCCGGTTAGGGTTTTTACGAAGATCTGCAT 1751 >seq2675 Length=17436 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATC-GCT-CATTGTGCTCGAGTCTTCGAGTTGTTTAC 143045 || ||||| || || |||||||| || ||| || | | || ||||| ||||| || | Sbjct 15548 GTGGATTCCTTCTGGATGTTGTAGTCTGCTACAGTTCGGTCA--TCTTCAAGTTGCTTGC 15491 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | ||| | || |||||||| || || || || ||||| |||||||| ||||| | Sbjct 15490 CGGCAAATATTAGACGTTGTTGGTCAGGTGGGATGCCCTCTTTGTCCTGGATTTTGGACT 15431 Query 143106 TTA-GCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAAT 143164 | | | |||| | | ||| | ||||| ||||| | || | |||||||||||| || Sbjct 15430 TAATGTTGTTG-ATTGAGTCAGATGGTTCGACTTCCATGGTTATCGTCTTGCCGGTTAAG 15372 Query 143165 GTTTTTACGAATATTTGCAT 143184 ||||| |||||||| ||||| Sbjct 15371 GTTTTAACGAATATCTGCAT 15352 >seq51823 Length=2487 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || || | || || || ||||| |||||||| || Sbjct 1343 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCG 1284 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| |||||||||||||| |||||| ||||||||| || || || Sbjct 1283 AGGGTTCGGCCGTCTTCAAGTTGTTTACCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 1224 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| ||| | | || | ||||| | || || Sbjct 1223 ATACCCTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACC 1164 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||| | || || ||||| |||||||| Sbjct 1163 TCAAGAGTGATTGTCTTTCCGGTAAGAGTCTTAACGAAGATTTGCAT 1117 >seq18408 Length=6019 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||| || || ||| | || || |||||||| ||||| || ||||| |||||| Sbjct 724 TCTTCAAGTTGCTTGCCGGCAAATATAAGGCGTTGCTGGTCGGGTGGGATGCCCTCTTTG 783 Query 143090 TCGGTAATTTTTTGTTTTA-GCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||||| || | | |||| | | ||| | ||||| ||||| | || | Sbjct 784 TCCTGGATTTTGGACTTAATGTTGTTG-ATTGAGTCAGATGGTTCAACTTCCATGGTTAT 842 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| |||||||| |||||||| ||||| Sbjct 843 TGTCTTGCCGGTTAATGTTTTCACGAATATCTGCAT 878 >seq2831 Length=23904 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || ||||| |||||||| ||| | |||| |||||| || ||||||||| Sbjct 5176 GTAGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCTAGCTGTTTACCA 5117 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||||||||| || || || || ||||| || || || || ||| Sbjct 5116 GCGAAGATAAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTATCTTGGATCTTGGTTTTG 5057 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || || | ||| | |||||||| || | ||| Sbjct 5056 ACATTGTCGATTGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTTGCCAGTTAGGGTT 4997 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 4996 TTCACGAAGATTTGCAT 4980 >seq10696 Length=13777 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||||| || || || || || ||||||||||||| || |||| ||||| Sbjct 6334 AACAAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCGCCCAGAGTGCGGCCATCTTC 6393 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || ||||| || || |||| || ||||| ||||| | || ||||| ||||||||| Sbjct 6394 AAGCTGTTTTCCTGCGAAGATTAGGCGTTGTTGATCAGATGGGATGCCCTCTTTGTCGTG 6453 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| ||| || || | ||||| | | ||| ||||||| || | || || Sbjct 6454 GATTTTGGATTTGAGGGTGTCGATTGTGTCTGATGATTCCACTTCAAGGGTGATTGTTTT 6513 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | |||| | ||| || ||||| Sbjct 6514 TCCGGTTAGGTTTTTCATGAAGATCTGCAT 6543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505064169110400