Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq33024 91.5 2e-13 seq100015 89.7 8e-13 >seq33024 Length=3557 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 |||||| | |||| | || |||||||| | || || || ||| || || | Sbjct 1522 AAGGCTGATTGGGCCTTGCGCTGGATCGACGGCGGGGAGAGTTT---CGCTGAGCGAATT 1466 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTG 125488 || || ||||| || || || || ||||| || || || || |||| | || ||||| Sbjct 1465 GTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTCTGCG-CGATATTTTG 1407 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 ||||||||| || ||| | ||||| || || || | |||||||| || |||||||| Sbjct 1406 GCTCAAGAAACGAGGATTAATGCCGGGGCTTACCTTCTCGAACGAGTTGATTTCTCGAGA 1347 Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573 |||||| |||||||||| || ||| Sbjct 1346 CGAGGGGTTACACTGTGATTTCGCC 1322 >seq100015 Length=1511 Score = 89.7 bits (98), Expect = 8e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TG 125475 ||| || || | || || ||||| || || || || ||||| || || || || || Sbjct 1386 CGCTGAGCGAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTCTG 1327 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 || | || |||||||||||||| || || | ||||| || || || | ||||||| Sbjct 1326 CG-CGATATTTTGGCTCAAGAAACGAGGGTTAATGCCAGGGCTTACCTTCTCGAACGAGT 1268 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | || |||||||||||||| ||||||||||||| ||| Sbjct 1267 TGATTTCTCGAGACGAGGGATTACACTGTGACTTCGCC 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738208715787200