Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq112514 125 5e-24 seq12130 123 2e-23 seq9871 116 3e-21 seq59535 107 1e-18 seq51823 105 5e-18 seq11074 104 2e-17 seq35076 98.7 7e-16 seq8115 98.7 7e-16 seq110967 91.5 1e-13 seq3774 89.7 4e-13 >seq112514 Length=1387 Score = 125 bits (138), Expect = 5e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| |||||||| ||| || | | | ||||| || || || || ||| | | Sbjct 423 CTTTTTGAATGTTGTAGTCGGCAAGCGTACGACCATCTTCCAACTGCTTACCGGCGAAAA 482 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 |||||||||||||||| ||||| |||||||| || ||| || | || ||| | | Sbjct 483 TCAAACGTTGTTGGTCCGGAGGAATACCTTCTTTATCTTGAATCTTAGTTTTGACATTAT 542 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 |||| ||||| ||| ||| || |||||||||||||||||||| || | ||||| || | Sbjct 543 CTATAGTATCACTAGATTCAACTTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTCACGA 602 Query 15354 AAATTTGCATATTT 15367 | || ||||| ||| Sbjct 603 ATATCTGCATTTTT 616 >seq12130 Length=7920 Score = 123 bits (136), Expect = 2e-23 Identities = 163/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| |||||||| || ||| ||| ||||||| Sbjct 5997 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGAGTTCGGCCGTCTTCG 6056 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | ||||||||||| ||||| ||||| || |||||||| | Sbjct 6057 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATCCCCTCTTTGTCTTGA 6116 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| | |||||| | || || || ||| | | || || || | || || || || Sbjct 6117 ATCTTGGTTTTTACATTGTCGATTGTGTCGGAACTCTCAACCTCGAGAGTGATTGTCTTT 6176 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATT 15379 || || ||||| || || || |||||| || |||| || ||||| Sbjct 6177 CCGGTAAGAGTCTTAACGAAGATTTGC--ATCTGAACATTAAATT 6219 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| |||||||| ||| || ||| | ||||| Sbjct 1211 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCTTCA 1270 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | ||||||||||| ||||| |||||||| |||||||| | Sbjct 1271 AGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGA 1330 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || | || ||| | || || || ||| | || || || | || ||||| ||| Sbjct 1331 ATCTTTGTTTTGACATTATCGATTGTGTCGGAGCTCTCAACCTCGAGAGTGATGGTCTTA 1390 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || || || |||||||| Sbjct 1391 CCGGTCAAAGTCTTAACGAAGATTTGCAT 1419 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | || || | ||| || || || || || || ||||||||||| Sbjct 737 CCACCTCTGAGACGCAACACCAGATGGAGTGTCGACTCCTTCTGGATGTTGTAATCAGCG 796 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||| || | || || ||||| | ||||| | || ||||| ||| Sbjct 797 AGGGTGCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 856 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| |||||| |||| || | || |||||||| | | || || Sbjct 857 ATTCCCTCCTTGTCCTGGATTTTGGTCTTAACGTTGTCAATGGTATCAGAACTCTCGACC 916 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| ||||| || || |||| || || || ||||| |||||| Sbjct 917 TCAAGGGTGATGGTCTTTCCGGTCAACGTCTTGACGAAAATCTGCATA 964 >seq9871 Length=9033 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || ||||| |||||||| ||| ||| ||| ||||||| | ||| Sbjct 944 ATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCGAGTTG 1003 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| |||||| | ||||||||||| ||||| ||||| ||||| || || ||||| Sbjct 1004 TTTACCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTGGATTTT 1063 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | | || ||| | || || || ||| | || || || | ||||| || || || || Sbjct 1064 GGTTTTGACATTGTCGATTGTGTCGGAGCTCTCGACCTCGAGAGTAATTGTCTTTCCGGT 1123 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || || |||||||| Sbjct 1124 CAGAGTCTTAACGAAGATTTGCAT 1147 >seq59535 Length=2228 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || |||||||| ||| || | | | ||||| | ||| Sbjct 1548 ATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCATCTTCGAGTTG 1607 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | || | |||||||||||| ||| |||||||||||||| ||||| Sbjct 1608 TTTTCCGGCGAAGATTAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTT 1667 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | | || ||| | || || || ||| ||| || || | ||| || ||||| || || Sbjct 1668 GGTTTTGACATTGTCGATTGTGTCGGAGGATTCAACCTCGAGGGTGATTGTTTTGCCGGT 1727 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTG 15368 || |||||||| || || ||||| |||| Sbjct 1728 TAGGGTTTTTACGAAGATCTGCATTTTTG 1756 >seq51823 Length=2487 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| || || || || ||||| |||||||| ||| || | | | |||| Sbjct 1784 AACACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGCCCGTCC 1725 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || ||||| | ||||| | || ||||| ||||||||||| ||||| Sbjct 1724 TCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC 1665 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| |||| ||| | || ||||||||| | | || || || | ||| || || Sbjct 1664 TGGATTTTGGTCTTGACATTGTCAATGGTATCGGAACTCTCAACCTCGAGGGTGATAGTC 1605 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || ||||| ||||||||| Sbjct 1604 TTGCCGGTCAAGGTCTTGACAAAGATTTGCATA 1572 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| |||||||| || || ||| ||||||| Sbjct 1325 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCTTCA 1266 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | ||||||||||| ||||| ||||| || || ||||| Sbjct 1265 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 1206 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| | || ||| | || || || ||| | | || || || | || || || || Sbjct 1205 ATTTTTGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCAAGAGTGATTGTCTTT 1146 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || || |||||||| Sbjct 1145 CCGGTAAGAGTCTTAACGAAGATTTGCAT 1117 >seq11074 Length=8391 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 |||||| | |||||| || || ||||| || || ||||||||| || | | | | || Sbjct 693 TAAAACAAGATGAAGAGTAGATTCTTTCTGGATATTGTAATCGGCTAAAGTACGACCATC 634 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | |||||| ||||| | || | ||||||||| || ||| || ||||||||||| Sbjct 633 TTCAAGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATGCCTTCTTTGTC 574 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || ||| | || ||| | || || || || ||| || |||| ||| || || Sbjct 573 TTGGATCTTGGTTTTGACATTGTCGATTGTGTCTGATGATTCAACTTCTAGGGTTATTGT 514 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||| || || || ||||| || || || ||||| ||| Sbjct 513 TTTGCCAGTTAGGGTTTTCACGAATATCTGCATTTTT 477 >seq35076 Length=3390 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| |||||||| ||||||||||| || ||| |||| || | || Sbjct 1870 ATGGAGAGTGGACTCTTTTTGAATGTTGTAATCAGCGAGTGTTCGGCCGTCCTCAAGCTG 1929 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| || | |||| | ||| ||||| ||||| || || ||||| |||||| Sbjct 1930 CTTGCCTGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATTTT 1989 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | | || ||| | || || ||||| | | || || || | |||||||| || ||||| Sbjct 1990 GGTTTTAACATTGTCGATTGTATCAGAACTCTCGACCTCGAGAGTAATGGTCTTGCCTGT 2049 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| Sbjct 2050 AAGGGTCTTGACAAAGATTTGCAT 2073 >seq8115 Length=10241 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || || || |||||||| ||| ||| | | ||||||| | ||| Sbjct 7292 ATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCTTCGAGTTG 7351 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | || | ||| |||||||| ||| |||||||||||||| || || Sbjct 7352 TTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTT 7411 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | | || ||| | || || || || ||| || || | ||| || ||||| || || Sbjct 7412 GGTTTTGACATTGTCGATTGTGTCTGAGGATTCAACCTCAAGGGTGATTGTTTTCCCAGT 7471 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTG 15368 || ||||| || || || ||||| |||| Sbjct 7472 TAGGGTTTTCACGAAGATCTGCATTTTTG 7500 >seq110967 Length=1286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| | | || || |||| ||||| || || || || || |||||||| || ||| Sbjct 652 CCACCACGAAGTCGTAGGACTAGGTGAAGTGTTGACTCCTTCTGGATGTTGTACTCTGCT 711 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | || | ||||| | || || || || |||||| ||||||||||| ||| Sbjct 712 AAGG-TCCTACCATCTTCAAGCTGCTTTCCTGCAAATATCAGTCGTTGTTGGTCTGGTGG 770 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || | || ||| | || || ||||| |||||| Sbjct 771 TATTCCTTCCTTGTCTTGGATCTTCGTTTTCACATTATCGATCGTATCTGAGGATTCTAC 830 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 |||| ||| || || || ||||| || ||||| || || || ||||| ||| Sbjct 831 CTCTAGGGTTATCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTTT 882 >seq3774 Length=25925 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| ||||| || || || || ||||||||||| || | | | || || Sbjct 8118 ACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACCATCCTCG 8059 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | |||| | ||| ||||| || |||| ||| ||||| | Sbjct 8058 AGTTGCTTTCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCATTCCTTGTCCTGA 7999 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| | || ||| | || ||||| || | | || || || | || || ||||| Sbjct 7998 ATTTTGGTTTTGACATTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATAGTTTTG 7939 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| |||||||| Sbjct 7938 CCAGTAAGAGTCTTGACAAAGATTTGCAT 7910 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 || |||||||| || ||||| || ||||| || || || | | | | || || || || Sbjct 8340 TGGAGGGTGGATTCCTTTTGAATATTGTAGTCAGCCAAGG-TGCGCCCATCCTCCAACTG 8282 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || || | ||||| | || || || ||| |||||||||||||| ||||| Sbjct 8281 CTTCCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCCTGGATTTT 8222 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||| ||| | || ||||| || | | || || || | ||| ||||| || || || Sbjct 8221 GGTCTTAACATTGTCAATGGTGTCAGAACTCTCAACTTCCAGGGTGATGGTCTTCCCGGT 8162 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| Sbjct 8161 AAGGGTCTTCACGAAAATCTGCAT 8138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360820905764520