Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq60406 104 2e-17 seq51823 86.0 5e-12 seq12130 86.0 5e-12 seq31228 84.2 2e-11 seq36261 82.4 6e-11 seq20614 82.4 6e-11 seq18381 82.4 6e-11 >seq60406 Length=2202 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| | | ||||| || | || |||||||| || || || ||||| ||| Sbjct 1102 CCTCCCCTCAAACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTATAATCAGCC 1161 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||| ||||| ||| | ||||| ||||||||||| ||| Sbjct 1162 AAAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGGGGG 1221 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || |||||| ||| || | | | | |||||| ||| Sbjct 1222 ATACCTTCCTTATCCTGAATTTTAGTTTTGACATTGTCAATAGTATCAGAGCTCTCAACC 1281 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||||||||| || || || || ||||| |||||||| ||||| Sbjct 1282 TCGAGGGTAATGGTCTTTCCAGTCAAGGTTTTCACAAAAATCTGCAT 1328 >seq51823 Length=2487 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || || ||||| ||||| | |||| | |||| || ||||| || || Sbjct 1541 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGTGTTCGGCCGTCTTCTAGCTGCTTGCCA 1482 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || ||||||| |||||||| || ||| | ||||| ||||| ||||| || Sbjct 1481 GCGAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATTTTAGTCTTG 1422 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | || ||| | ||| || | ||| || ||||| || || || || Sbjct 1421 ACGTTGTCAATGGTGTCGGAACTCTCGACCTCAAGGGTGATTGTTTTGCCGGTCAAGGTC 1362 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||| ||||| Sbjct 1361 TTGACAAAAATCTGCAT 1345 >seq12130 Length=7920 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| ||||||||||||||||||| || | ||||||| |||||| || Sbjct 5325 GTAGATTCCTTCTGAATATTGTAATCCGCCAAAGTGCGCCCATCCTCCAACTGTTTCCCA 5384 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||||||||||| || | || || || || || ||| || Sbjct 5385 GCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATCTTCGTCTTG 5444 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||| |||| |||| || | ||| ||||| || || || || || Sbjct 5445 ACATTATCGATAGTGTCGCTGCTCTCCACCTCTAAGGTGATGGTCTTGCCAGTCAATGTC 5504 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 5505 TTGACAAAGATCTGCAT 5521 >seq31228 Length=3734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || | | ||||| ||| | |||||||||||| || || || || || ||| Sbjct 3093 CCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTAGACTCCTTCTGGATGTTATAGTCGGCC 3152 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || ||||||||||||| ||||| ||| | || | || ||||| || ||| Sbjct 3153 AAAGTACGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAACCTTTGCTGGTCTGGGGGG 3212 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGT-TTTACCTGGCCGACAGTATCGCCAG-GCTCCG 18992 | ||||| ||||| || || ||| || || | | | | ||| || | || ||| Sbjct 3213 ATACCCTCCTTGTCTTGGATCTT-TGTCTTGACATTGTCAATAGTGTC-CGAGCTCTCAA 3270 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| |||||||| || || | || || |||||||| ||||| Sbjct 3271 CTTCAAGGGTGATGGTTTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 3319 >seq36261 Length=3302 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || |||||||| || || || ||||| || | ||| | | ||||| Sbjct 2564 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTTCGGCCATCCTC 2505 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || ||||| ||||| || || | |||||| ||||| Sbjct 2504 CAGCTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTG 2445 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | | || ||| | ||| |||| |||||||| || Sbjct 2444 AATCTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCGAGAGTAATGGTCTT 2385 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| || ||||| || |||||||| Sbjct 2384 GCCAGTTAGGGTCTTGACGAAGATTTGCAT 2355 >seq20614 Length=5371 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||||||||||||||| || || ||||| || | || | | || || Sbjct 2300 CACAAGGTGAAGCGTAGACTCCTTTTGGATGTTATAATCTGCAAGAGTGCGGCCATCTTC 2241 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || |||||||||||||| || | |||||| ||||| Sbjct 2240 AAGCTGCTTTCCTGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTG 2181 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | | | | || || | ||| |||| |||||||| || Sbjct 2180 AATCTTAGTCTTGACATTGTCAATGGTGTCTGAACTCTCGACCTCGAGAGTAATGGTCTT 2121 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || |||||||| |||||||| Sbjct 2120 GCCGGTAAGGGTCTTGACAAATATTTGCAT 2091 >seq18381 Length=6025 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || ||||||||||||||||||||||| || | ||| | | ||||| Sbjct 2091 CACCAAATGGAGGGTGGACTCCTTTTGAATATTGTAATCAGCAAGGGTTCGGCCATCCTC 2150 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || || || || ||| | || || || ||||| || || | ||| || ||||| Sbjct 2151 AAGTTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTG 2210 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | | || ||| | ||| |||| |||||||| || Sbjct 2211 AATCTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCGAGAGTAATGGTCTT 2270 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| || ||||| || |||||||| Sbjct 2271 GCCAGTTAGGGTCTTGACGAAGATTTGCAT 2300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413018012081680