Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq18381 91.5 9e-14 seq9218 86.0 4e-12 seq12130 84.2 1e-11 seq3774 82.4 5e-11 >seq18381 Length=6025 Score = 91.5 bits (100), Expect = 9e-14 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | ||||||||| | || ||||| ||||| ||||||||||||| | Sbjct 2074 CCTCCTCTGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGAATATTGTAATCAG-C 2132 Query 33203 AAATTGAGTT-GGTCATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 || | ||| || ||||| | |||||| ||| ||| || | | ||||||||| | Sbjct 2133 AA---GGGTTCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCTGG 2189 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || || |||| ||| || | | ||| |||||| | Sbjct 2190 AGGAATGCCTTCCTTGTCCTGAATCTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTC 2249 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || || || || || || || || ||||| |||||||| Sbjct 2250 AACCTCGAGAGTAATGGTCTTGCCAGTTAGGGTCTTGACGAAGATTTGCAT 2300 >seq9218 Length=18002 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || || | || | ||||||||| | |||||||| || || ||||||||||||| Sbjct 14658 ACCACCCCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGC 14717 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | ||| |||||||| ||||| ||| || || | ||||| || | || Sbjct 14718 TAGGGTACGCCCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGG 14777 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 || |||||||| || ||| ||| || || | | ||| ||||| | || | Sbjct 14778 AATCCCTTCTTTATCCTGGATC-TTTGTCTTCACATTGTCAATGGTGTCCGAGCTTTCGA 14836 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | ||||| || || ||||| || || ||||| || |||||||| ||||| Sbjct 14837 CTTCCAGGGTAATAGTTTTCCCAGTTAGAGTCTTGACGAAAATCTGCAT 14885 >seq12130 Length=7920 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| ||||| || ||||| || | | | | | ||| || Sbjct 5997 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGAGTTCGGCCGTCTTCG 6056 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| || ||| || || |||||||||||||| | ||| || || ||||| || | Sbjct 6057 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATCCCCTCTTTGTCTTGA 6116 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||| | | || |||||| | ||| || ||||| || || ||| Sbjct 6117 ATCTTGGTTTTTACATTGTCGATTGTGTCGGAACTCTCAACCTCGAGAGTGATTGTCTTT 6176 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || ||||| |||||||| Sbjct 6177 CCGGTAAGAGTCTTAACGAAGATTTGCAT 6205 >seq3774 Length=25925 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT-TGGTCAT 33218 ||| | ||| | || ||||| ||||| ||||||||||| | ||| | || || ||| Sbjct 7891 CACAAGATGGAGGGTGGACTCCTTTTGAATATTGTAATCTG-CAA---GGGTGCGGCCAT 7836 Query 33219 CC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 || | |||||||||| ||| || | | ||||||||| | || ||||| || || | Sbjct 7835 CCTCAAGTTGCTTTCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATGCCCTCCTTGT 7776 Query 33276 CGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCG 33335 | |||| ||| || | | ||| |||||| | ||| |||||||| || | Sbjct 7775 CCTGAATCTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCCAGAGTAATGG 7716 Query 33336 TTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || ||||| || |||||||| |||||||| Sbjct 7715 TCTTCCCAGTAAGGGTCTTTACGAAGATTTGCAT 7682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317582076412560