Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq9218 118 7e-22 seq112514 109 4e-19 seq2831 102 6e-17 seq150073 100 2e-16 seq278817 98.7 7e-16 seq279023 95.1 9e-15 seq12130 93.3 3e-14 seq18381 89.7 4e-13 seq36261 86.0 4e-12 seq31228 86.0 4e-12 seq112307 82.4 5e-11 >seq9218 Length=18002 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || ||||| | | ||||||||| || || ||| || |||||||| ||||| Sbjct 14886 ACCACCCCTCAAACGAAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGC 14945 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || |||| | || ||||||||||| || ||||| ||||| | ||||| || | || Sbjct 14946 TAGGGTACGCCCGTCTTCCAATTGTTTCCCGGCAAAGATCAATCTCTGCTGATCTGGGGG 15005 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| |||||| ||||| | ||| |||||| | |||||| Sbjct 15006 AATCCCTTCCTTATCTTGAATTTTCGTCTTGACATTGTCAATAGTATCAGAGCTCTCCAC 15065 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || ||||| |||||||| |||||||| ||||| Sbjct 15066 CTCCAAAGTGATGGTCTTCCCGGTCAAAGTCTTAACAAATATCTGCAT 15113 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || ||| || |||||||| ||||| || |||| | || || Sbjct 14676 CACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGCTAGGGTACGCCCGTCTTC 14735 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTG 44030 |||||||||||| ||||| ||||| | ||||| || |||| | |||||||||| ||| Sbjct 14736 CAATTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATCCCTTCTTTATCCTG 14795 Query 44031 AAATTTTTTGT-TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 | | ||||| || || | ||| || || | || || || | ||||| ||| Sbjct 14796 GA--TCTTTGTCTTCACATTGTCAATGGTGTCCGAGCTTTCGACTTCCAGGGTAATAGTT 14853 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||| |||||| || || || ||||| Sbjct 14854 TTCCCAGTTAGAGTCTTGACGAAAATCTGCAT 14885 >seq112514 Length=1387 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||||||||| || || ||| | ||| |||| ||||| || || || || || | Sbjct 423 CTTTTTGAATGTTGTAGTCGGCAAGCGTACGACCATCTTCCAACTGCTTACCGGCGAAAA 482 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| ||||| |||||| |||| | ||||||||||||| ||| || |||||| || Sbjct 483 TCAAACGTTGTTGGTCCGGAGGAATACCTTCTTTATCTTGAATCTTAGTTTTGACATTAT 542 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 | | |||||| | || || || | ||||| |||||||| ||||| || ||||| | Sbjct 543 CTATAGTATCACTAGATTCAACTTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTCACGA 602 Query 44112 ATATTTGCAT 44121 |||| ||||| Sbjct 603 ATATCTGCAT 612 >seq2831 Length=23904 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| || ||||||||||| ||||| || |||| |||| |||||||| Sbjct 5867 ATGAAGAGTGGATTCCTTTTGAATATTGTAATCAGCCAAGGTACGCCCATCTTCCAATTG 5808 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 |||||||||||||||| || ||||| || |||| | |||||| || ||| || || Sbjct 5807 CTTTCCTGCAAATATCAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGTATCTT 5748 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 || || || ||| || || | |||||| || | || || || || ||||| Sbjct 5747 CGTCTTCACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGT 5688 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || ||||||||||| || ||||| Sbjct 5687 CAATGTCTTCACAAAGATCTGCAT 5664 >seq150073 Length=1124 Score = 100 bits (110), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||||||||| || || || |||| ||||| || ||||||||||| Sbjct 248 TCCTTTTGAATATTATAGTCAGCCAAGGTGCGGCCATCCTCCAACTGCTTTCCTGCAAAG 189 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGT-TTGACCA 44048 ||||||| |||||| || | || | ||||| |||| ||| | | ||||| ||||| Sbjct 188 ATCAACCTTTGCTGATCTGGCGGGATCCCTTCCTTATCCTGTA--TCTTTGTCTTGACAT 131 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || | | |||||| | |||||| || | || || ||||| || || || || |||| Sbjct 130 TATCGATAGTATCAGAGCTCTCCACTTCTAAGGTGATAGTTTTCCCAGTCAAGGTTTTCA 71 Query 44109 CAAATATTTGCAT 44121 |||| |||||||| Sbjct 70 CAAAAATTTGCAT 58 >seq278817 Length=610 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 || ||||||||||| || || | | || || ||| |||| ||||| || || |||||||| Sbjct 250 TCCTTTTGAATATTGTAGTCAGCTAAAGTG-CGCCCATCCTCCAACTGCTTCCCTGCAAA 308 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCA 44048 ||||||| |||||| || | || | ||||| |||| ||| | | ||||| | | || Sbjct 309 GATCAACCTTTGCTGATCTGGTGGGATCCCTTCCTTATCCTGTA--TCTTTGTCTTAACA 366 Query 44049 TAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTC 44107 | | ||| |||||| | |||||| || | ||||| || || ||||| | || ||| Sbjct 367 TTGTCAATAGTATCAGAACTCTCCACTTCTAGGGTAATAGTCTTCCCGGTAAGGGTTTTC 426 Query 44108 ACAAATATTTGCAT 44121 || || |||||||| Sbjct 427 ACGAAAATTTGCAT 440 >seq279023 Length=610 Score = 95.1 bits (104), Expect = 9e-15 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 || ||||||||||| || || | | || || || |||| ||||| || || |||||||| Sbjct 361 TCCTTTTGAATATTGTAGTCAGCTAAAGTG-CGGCCATCCTCCAACTGCTTCCCTGCAAA 303 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCA 44048 ||||||| |||||| || | || | ||||| |||| ||| | | ||||| | | || Sbjct 302 GATCAACCTTTGCTGATCTGGTGGGATCCCTTCCTTATCCTGTA--TCTTTGTCTTAACA 245 Query 44049 TAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTC 44107 | | ||| |||||| | |||||| || | ||||| || || ||||| | || ||| Sbjct 244 TTGTCAATAGTATCAGAGCTCTCCACTTCTAGGGTAATAGTCTTCCCGGTAAGGGTTTTC 185 Query 44108 ACAAATATTTGCAT 44121 || || |||||||| Sbjct 184 ACGAAAATTTGCAT 171 >seq12130 Length=7920 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| ||| ||||| || || || ||| | || |||| || Sbjct 1211 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCTTCA 1270 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||| || ||||| ||||| ||||||||||| | || | || ||||| ||| | Sbjct 1271 AGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGA 1330 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| |||||| || | | || || | ||| || |||| || || || ||| Sbjct 1331 ATCTTTGTTTTGACATTATCGATTGTGTCGGAGCTCTCAACCTCGAGAGTGATGGTCTTA 1390 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| |||||||| || || |||||||| Sbjct 1391 CCGGTCAAAGTCTTAACGAAGATTTGCAT 1419 >seq18381 Length=6025 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | | | ||||||||| || ||| ||| ||||||||||| ||||| Sbjct 2074 CCTCCTCTGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGAATATTGTAATCAGCA 2133 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| || | ||| || || ||||| |||| || ||||||||| |||| Sbjct 2134 AGGGTTCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGA 2193 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || || ||| || |||||| | ||| || || | ||| || Sbjct 2194 ATGCCTTCCTTGTCCTGAATCTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCAACC 2253 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| || || || |||| ||||| || || |||||||| Sbjct 2254 TCGAGAGTAATGGTCTTGCCAGTTAGGGTCTTGACGAAGATTTGCAT 2300 >seq36261 Length=3302 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || ||||||||||| || || || || |||| ||||| || || |||||||| Sbjct 2773 TCCTTTTGAATATTGTAGTCAGCCAAGGTGCGGCCATCCTCCAACTGCTTCCCTGCAAAG 2714 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGT-TTGACCA 44048 ||||||| |||||| || | || | ||||| || | ||| | | ||||| ||||| Sbjct 2713 ATCAACCTTTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGTA--TCTTTGTCTTGACAT 2656 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || ||| |||||| | |||||| || | || ||||| || ||||| | ||||||| Sbjct 2655 TATCAATAGTATCCGAGCTCTCCACCTCTAAAGTGATTGTCTTCCCGGTAAGGGTCTTCA 2596 Query 44109 CAAATATTTGCAT 44121 | || || ||||| Sbjct 2595 CGAAAATCTGCAT 2583 >seq31228 Length=3734 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| | | |||||| || ||||| ||| || || || ||||| ||| Sbjct 3093 CCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTAGACTCCTTCTGGATGTTATAGTCGGCC 3152 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| | || |||| || || || ||||| ||||||| ||||||||| | || Sbjct 3153 AAAGTACGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAACCTTTGCTGGTCTGGGGGG 3212 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || || ||| || ||| ||||| | ||| ||| || | ||| || Sbjct 3213 ATACCCTCCTTGTCTTGGATCTTTGTCTTGACATTGTCAATAGTGTCCGAGCTCTCAACT 3272 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||||||||| || ||||| Sbjct 3273 TCAAGGGTGATGGTTTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 3319 >seq112307 Length=1389 Score = 82.4 bits (90), Expect = 5e-11 Identities = 118/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 43961 CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020 ||| |||| |||||||| || || |||||||||| || |||| ||| |||| | ||| Sbjct 905 CGCCCATCCTCCAATTGCTTCCCAGCAAATATCAGCCTCTGCTAATCCGGAGGGATCCCT 964 Query 44021 TCTTTATC-TGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCCACATCGA 44078 || || || |||| | ||||||| ||| | ||| |||| | |||||| | | Sbjct 965 TCCTTGTCCTGAA--TCTTTGTTTTCACATTGTCAATTGTATTCGAGCTCTCCACCTTTA 1022 Query 44079 CCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || | || || |||||||| |||||||||||||| Sbjct 1023 GGGTAATGGTCATTCCTGTCAAAGTCTTGACAAATATTTGCAT 1065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353447064262560