Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq33024 84.2 2e-11 >seq33024 Length=3557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || ||| || ||||||||||| || || || |||| | || | |||||| || | Sbjct 1312 ACAACAAACAGGCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1371 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | || || |||||||| | |||||||| || | ||||||||| || ||| || || Sbjct 1372 AGGTAAGCCCCGGCATTAATCCTCGTTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCA 1430 Query 13262 GaaaaaaaTATTCCTTCAAC 13281 || || ||||| |||||||| Sbjct 1431 GAGAAGAATATCCCTTCAAC 1450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429366070543440