Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq60406 98.7 8e-16 seq51823 93.3 4e-14 seq12130 89.7 4e-13 seq31228 87.8 2e-12 seq2831 84.2 2e-11 seq112514 82.4 6e-11 seq16687 82.4 6e-11 seq9218 82.4 6e-11 >seq60406 Length=2202 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| ||||| || || |||||| || ||||| ||||||||| Sbjct 1102 CCTCCCCTCAAACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTATAATCAGCC 1161 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || ||||||| ||||||||||| | | || | | ||||||||| || Sbjct 1162 AAAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGGGGG 1221 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||| ||| |||||| |||| | | || ||||| | ||| | Sbjct 1222 ATACCTTCCTTATCCTGAATTTTAGTTTTGACATTGTCAATAGTATCAGAGCTCTCAACC 1281 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| || || || | |||||||||||||||||||| Sbjct 1282 TCGAGGGTAATGGTCTTTCCAGTCAAGGTTTTCACAAAAATCTGCAT 1328 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||||| | ||| | |||||| || ||| || |||||||| ||||||||| Sbjct 1330 CCTCCCCTCAACCGAAGCACAAGATGAAGAGTCGACTCTTTCTGAATGTTATAATCAGCC 1389 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| | ||||| || ||||| || || | || | | |||||| || || Sbjct 1390 AGAGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCTGGAGGA 1449 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| |||||| |||| | | ||||| |||| | ||| | Sbjct 1450 ATGCCCTCCTTGTCCTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCGACC 1509 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || || || || || || || ||||||||||| || |||||| Sbjct 1510 TCCAGAGTAATTGTCTTGCCAGTTAGGGTTTTCACAAAGATTTGCATC 1557 >seq51823 Length=2487 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| ||||| || || |||||||||||||||||| || | ||| || ||| |||| Sbjct 1784 AACACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTC-GGCAAGGGTGCGCCCGTC 1726 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| || | | || || | |||||| || || | | ||||||||| Sbjct 1725 CTCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTC 1666 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||||| ||||| | | |||||||||| | ||| ||||| || || || Sbjct 1665 CTGGATTTTGGTCTTGACATTGTCAATGGTATCGGAACTCTCAACCTCGAGGGTGATAGT 1606 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| | || || ||||| || ||||| Sbjct 1605 CTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 1573 >seq12130 Length=7920 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| ||||| ||||| |||||| || |||||||||||||| | || ||||| Sbjct 5538 AACACCAAATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCC 5597 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| | |||| | | |||||| || || | | ||||| ||| Sbjct 5598 TCGAGCTGCTTTCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCC 5657 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | |||||||||| | |||| ||||| || || || Sbjct 5658 TGGATCTTGGTCTTGACATTGTCAATGGTATCGGAACTCTCCACCTCGAGGGTAATAGTC 5717 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | ||| || || ||||||||||| Sbjct 5718 TTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 5749 >seq31228 Length=3734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || || ||||||||||| ||||| || || ||||| || |||||||||||||| Sbjct 3345 TGCAGGGTACTCTCCTTTTGGATGTTATAGTCTGCCAAAGTACGGCCGTCCTCCAGCTGC 3404 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | | || | | |||||||| || | || ||||| ||| |||||| Sbjct 3405 TTACCAGCAAAGATGAGCCTTTGCTGATCTGGAGGAATACCCTCCTTATCCTGAATTTTG 3464 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | ||| ||| | || ||||| || || || Sbjct 3465 GTCTTGACATTGTCAATTGTGTCCGAGCTCTCGACCTCAAGGGTAATGGTCTTTCCAGTC 3524 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || |||||||||||||||||||| Sbjct 3525 AGGGTTTTCACAAAAATCTGCAT 3547 >seq2831 Length=23904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| ||||||||||| |||||||||||||| ||| | || |||| || Sbjct 5867 ATGAAGAGTGGATTCCTTTTGAATATTGTAATCAGCCAAGGTACGCCCATCTTCCAATTG 5808 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | || ||||||||| || || Sbjct 5807 CTTTCCTGCAAATATCAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGTATCTT 5748 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | ||||| |||| |||| ||| | || ||||| || ||||| Sbjct 5747 CGTCTTCACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGT 5688 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| |||||||| Sbjct 5687 CAATGTCTTCACAAAGATCTGCAT 5664 >seq112514 Length=1387 Score = 82.4 bits (90), Expect = 6e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 48539 TTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAAT 48597 |||||||||||||| || | ||| || || | || |||| |||||||||| || |||| Sbjct 425 TTTTGAATGTTGTAGTC-GGCAAGCGTACGACCATCTTCCAACTGCTTACCGGCGAAAAT 483 Query 48598 TAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGC 48657 ||||| || || ||| || | || ||| || || ||| || |||| | | Sbjct 484 CAAACGTTGTTGGTCCGGAGGAATACCTTCTTTATCTTGAATCTTAGTTTTGACATTATC 543 Query 48658 TATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAA 48717 ||| ||||| |||| || || | || ||||||||||| || | |||||||| || Sbjct 544 TATAGTATCACTAGATTCAACTTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTCACGAA 603 Query 48718 AATCTGCAT 48726 |||||||| Sbjct 604 TATCTGCAT 612 >seq16687 Length=6431 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| |||||| || ||||| ||||||||||| || ||||||| Sbjct 1187 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAAAGTGCGGCCGTCCTC 1246 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| | | || | | ||||| || || | | |||||||||| Sbjct 1247 AAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 1306 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | ||||| || | ||| || | || ||||| || Sbjct 1307 AATCTTGGTCTTGACATTGTCAATGGTGTCCGAGCTCTCAACTTCAAGGGTAATGGTCTT 1366 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||| ||||||||||| Sbjct 1367 TCCGGTAAGCGTCTTCACGAAAATCTGCAT 1396 >seq9218 Length=18002 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| ||||| || || |||||| ||||| ||||||||||| Sbjct 14886 ACCACCCCTCAAACGAAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGC 14945 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| |||| |||| || || ||| | | || || | ||||||||| || Sbjct 14946 TAGGGTACGCCCGTCTTCCAATTGTTTCCCGGCAAAGATCAATCTCTGCTGATCTGGGGG 15005 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| || ||||||| ||||| | | || ||||| | |||| Sbjct 15006 AATCCCTTCCTTATCTTGAATTTTCGTCTTGACATTGTCAATAGTATCAGAGCTCTCCAC 15065 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || ||||| | ||| || ||||| |||||||| Sbjct 15066 CTCCAAAGTGATGGTCTTCCCGGTCAAAGTCTTAACAAATATCTGCAT 15113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419671365827720