Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq20274 111 8e-20 seq7948 111 8e-20 seq22730 109 3e-19 seq15830 109 3e-19 seq7941 109 3e-19 seq9116 107 1e-18 seq4714 107 1e-18 seq28050 105 3e-18 seq1140 105 3e-18 seq172150 104 1e-17 seq125572 104 1e-17 seq9271 104 1e-17 seq957 104 1e-17 seq124400 102 4e-17 seq14205 102 4e-17 seq6188 102 4e-17 seq1893 102 4e-17 seq1072 102 4e-17 seq386 102 4e-17 seq14933 100 1e-16 seq4839 100 1e-16 seq1272 100 1e-16 seq192762 98.7 5e-16 >seq20274 Length=5551 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4924 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4983 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 4984 TGAGCTAATGGGCCG 4998 >seq7948 Length=10330 Score = 111 bits (122), Expect = 8e-20 Identities = 81/94 (86%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| ||| || |||||||| ||| | | |||||||| ||||||||||||||||||| Sbjct 9182 AATAATAAAGCAGAAATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 9123 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||| ||||||||||||||| |||| || Sbjct 9122 ACGACGCTCTAACCAACTGAGCTAATAGGCCTTC 9089 >seq22730 Length=4965 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2271 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2330 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2331 TGAGCTAATGGGCC 2344 >seq15830 Length=6671 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||||| | | ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 5285 TTAAGAAAAAA--ATAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 5342 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 5343 ACGACGCTCTAACCAACTGAGCTAATAGGCC 5373 >seq7941 Length=16410 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 11143 AAATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 11202 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 11203 CAACTGAGCTAATAGGCCG 11221 >seq9116 Length=9520 Score = 107 bits (118), Expect = 1e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| |||||| || ||||||||| | | |||||||| ||||||| ||||||||| Sbjct 6854 AATTATGAAAAAAAGAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTA 6913 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||||||||||||||||||| Sbjct 6914 GCACCACGCTCTAACCAACTGAGCTAATGGGCC 6946 >seq4714 Length=13765 Score = 107 bits (118), Expect = 1e-18 Identities = 82/96 (85%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 11437 AATTAATAA---AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||||| || |||| ||||| |||| ||| | | |||||||| |||||||||||||| Sbjct 451 AATTAAAAACGCAAAAACAAAT-GGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 509 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 510 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 545 >seq28050 Length=4048 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || |||| |||| |||| ||| | | |||||||| ||||||||||||||||||||| Sbjct 759 AAAAATAAATAAAAT-GGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 701 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 700 GACGCTCTAACCAACTGAGCTAATAGGCC 672 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1565 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1506 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1505 CAACTGAGCTAATAGGCC 1488 >seq1140 Length=36917 Score = 105 bits (116), Expect = 3e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | || ||||| ||| | | |||||||| ||||||||||||||||||||||||| Sbjct 4480 AAAAAACGAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 4539 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 4540 CTCTAACCAACTGAGCTAATAGGCC 4564 Score = 104 bits (114), Expect = 1e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2290 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2349 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 ||||||||||||| |||| || Sbjct 2350 CAACTGAGCTAATAGGCCTTC 2370 Score = 100 bits (110), Expect = 1e-16 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| | || |||| ||| | | |||||||| ||||||||||||||||||||| Sbjct 3560 AATCAAAAAAGAGAT-GGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 3618 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 3619 GACGCTCTAACCAACTGAGCTAATAGGCC 3647 >seq172150 Length=1020 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| |||| ||||| ||| | | |||||||| |||||||||||||||||||||| Sbjct 550 AAAAAAGCAAAAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 491 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 490 ACGCTCTAACCAACTGAGCTAATAGGCC 463 >seq125572 Length=1280 Score = 104 bits (114), Expect = 1e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 403 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 462 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 ||||||||||||| |||| || Sbjct 463 CAACTGAGCTAATAGGCCATC 483 >seq9271 Length=9410 Score = 104 bits (114), Expect = 1e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1924 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1865 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 1864 CAACTGAGCTAATAGGCCG 1846 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2999 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2940 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 2939 CAACTGAGCTAATAGGCC 2922 >seq957 Length=35206 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 11445 AAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| ||| |||||| ||| | | |||||||| ||||||||||||||||||||| Sbjct 26444 AAAAATAAAAATTGTTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 26503 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 26504 GACGCTCTAACCAACTGAGCTAATAGGCC 26532 >seq124400 Length=1290 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1111 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1170 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1171 CAACTGAGCTAATAGGCC 1188 >seq14205 Length=7149 Score = 102 bits (112), Expect = 4e-17 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| ||| ||||| ||| | | |||||||| |||||||||||||||||||| Sbjct 1345 AATAAAAACAAAAACATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 1286 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 1285 CGACGCTCTAACCAACTGAGCTAATAGGCC 1256 >seq6188 Length=11986 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1841 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1782 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1781 CAACTGAGCTAATAGGCC 1764 >seq1893 Length=19838 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 772 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 713 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 712 CAACTGAGCTAATAGGCC 695 >seq1072 Length=23696 Score = 102 bits (112), Expect = 4e-17 Identities = 86/105 (82%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||||||| | ||| | ||||||| | ||||| ||| | | |||||||| ||||| Sbjct 10422 AGGGAAAAA---AATAAGGAAAAAATAA---TGGCCTATGCAGGTCTCGAACCTGCGACC 10369 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 10368 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 10324 >seq386 Length=30978 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 25922 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 25981 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 25982 CAACTGAGCTAATAGGCC 25999 >seq14933 Length=6915 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3005 TGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3064 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3065 TGAGCTAATAGGCC 3078 >seq4839 Length=13579 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4725 TGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4784 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 4785 TGAGCTAATAGGCC 4798 >seq1272 Length=22461 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 17529 TGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 17588 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 17589 TGAGCTAATAGGCC 17602 >seq192762 Length=930 Score = 98.7 bits (108), Expect = 5e-16 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| | | | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 26 AAAATGGCCTAGGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 85 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 ||||||||||||| |||| || Sbjct 86 CAACTGAGCTAATAGGCCATC 106 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260510519746720