Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1 522 4e-143 seq125723 93.3 7e-14 >seq1 Length=146306 Score = 522 bits (578), Expect = 4e-143 Identities = 710/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || | || |||||||||||| | Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAA-AACCGCCTTTACATCGGGTGGTTTGGTGTTTT 87925 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | || | | ||||||| | ||||| |||| ||||| || || | Sbjct 87926 GATGATCCC-TACATTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTC 87984 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || |||||||| || |||| || | | || || |||| Sbjct 87985 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 88044 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || || |||||||| || |||| |||| || || || || ||||| ||||| | Sbjct 88045 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAA 88104 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | |||||||||||| || ||||||||||| | ||||||||||||||||| || | | Sbjct 88105 TATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 88164 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | || ||||| | ||||||||||| | || Sbjct 88165 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 88224 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | ||||||||||||||||| |||||| |||||||| || || | || ||| | Sbjct 88225 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTG 88284 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 | || ||| | | |||||| ||||||| || || || || ||||||||| |||| | Sbjct 88285 CGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 88344 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 | || || || |||||||||||| | |||||||| || || || |||||||||||||||| Sbjct 88345 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 88404 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| ||||| || ||| | ||||| || | |||| ||||||||| | Sbjct 88405 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 88464 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 |||| | || || ||| | ||| | |||||||| | || || || | | Sbjct 88465 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 88524 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 |||||| ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || | Sbjct 88525 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 88584 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 || || | |||||||| ||||| ||||| || | ||||||||||||| | | Sbjct 88585 GTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAG 88644 Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407 | | ||||| || | || | ||||| || || | ||||| |||| ||||| |||| Sbjct 88645 CTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCA 88704 Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467 || ||||||| ||||| ||||||||||| || |||||| |||| || || || Sbjct 88705 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 88764 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527 |||||| |||| | ||||| | || ||||||||||||||||||||||| ||| | |||| Sbjct 88765 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 88824 Query 212528 CACACAACTTCCCACTTGACTTAGC 212552 | || |||||||| || |||||||| Sbjct 88825 CTCATAACTTCCCTCTAGACTTAGC 88849 >seq125723 Length=1279 Score = 93.3 bits (102), Expect = 7e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||| ||| | |||||||||||||| ||||||||||| || | ||||| || || ||||| Sbjct 721 TGGCATTTTGTTCAATCACGAATCACCAAGAAGAGGAGAAAACTTTGTGACCCGAAAGAT 780 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCT 194065 || | || | || | |||| | || | |||| | || | || || ||| | Sbjct 781 CACTCGAGCTGTAGGCAGGATCAAGATCGGCCTTCAGAGCAAACTATTCCTCGGCAATAT 840 Query 194066 TAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTT 194125 | | || ||||| ||||| || ||||||||| || || |||||||| ||| | Sbjct 841 TCAGGCATCAAGGGACTGGGGTTTTGCCGGGGATTATGTCGAGGCAATGTGGTTGATGCT 900 Query 194126 GCAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 ||||| ||| | || ||||| ||||| | ||||| Sbjct 901 TCAACAAGATAAGCCAGATGACTATGTCGTGGCTAC 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 804448938923200