Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1 527 7e-145 >seq1 Length=146306 Score = 527 bits (584), Expect = 7e-145 Identities = 712/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| ||| || || ||| | ||| | || ||||||||||| || Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | | ||||| || || || ||| |||| ||||| ||||||||| Sbjct 87927 ATGATCCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCT 87986 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 87987 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 88046 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 || || |||||||| | |||| |||| || ||||| || ||||| ||||| || Sbjct 88047 ATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATA 88106 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 ||||||||||| || | || |||||||| ||||| || |||||||| || || || || Sbjct 88107 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTT 88166 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | |||||| | |||| | || || |||||| | |||||||||| | | | Sbjct 88167 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 88226 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 || || ||| | |||||||| ||| ||||| ||||| || || | || || ||| Sbjct 88227 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCG 88286 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| || Sbjct 88287 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATT 88346 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 || ||||| |||||||||||| | || ||||| || || |||||||| || |||||||| Sbjct 88347 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 88406 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 171265 || || ||| |||||||| ||| | ||||| || || || ||||| ||||| ||| Sbjct 88407 TTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 88466 Query 171266 TCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGC 171325 || | || || ||| | | ||||| || || || || || || | || | || Sbjct 88467 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 88526 Query 171326 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 171385 || | ||||| ||||| |||||||| ||||| || || ||||||||||| || || ||| Sbjct 88527 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGT 88586 Query 171386 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 171445 ||||||||||||| ||||| ||||| || |||||||| |||||||||||| | ||| Sbjct 88587 CGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCT 88646 Query 171446 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 171505 | | || ||||| || | ||||| || || | ||||| | || ||||| |||||| Sbjct 88647 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAAC 88706 Query 171506 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACA 171565 | || || ||||| ||||||||||| || || ||| | || | | || Sbjct 88707 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACT 88766 Query 171566 TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCA 171625 |||| ||| | ||||| | || |||||||| |||||||||||||||||| | ||||| Sbjct 88767 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 88826 Query 171626 CACAACTTCCCACTAGACCTAGCATCTGCTGA 171657 || |||||||| |||||| |||| ||| ||| Sbjct 88827 CATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858 Score = 370 bits (410), Expect = 1e-97 Identities = 715/1053 (68%), Gaps = 29/1053 (3%) Strand=Plus/Minus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | |||||| || | ||||| |||||| ||||| |||||||| || | | Sbjct 58162 AAAAAGATTTGTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAG 58103 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || || || ||||||||||| | || | || |||||||| | Sbjct 58102 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGG 58043 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 58042 GTACGACGTTTGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCT 57983 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || || ||||| ||||| || || || |||| | || | | | || | | |||| Sbjct 57982 GCAATTTCTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGT 57923 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||||||| || || |||| ||||||||| || || | Sbjct 57922 TGCTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGT 57863 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 ||| ||||| || | ||||| | || ||||| |||||||| ||| | | || || | Sbjct 57862 GGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCG 57803 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || |||| | || ||||| || ||| | |||||||| | |||| Sbjct 57802 AACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTG 57743 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || | || ||||| |||||| |||| ||| | |||||||||| || | Sbjct 57742 CTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGC 57683 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATAT----TTTATTCATACAGGGTTTCCAC 172319 || |||||||| ||||| || || || | || ||| |||| ||||||| || Sbjct 57682 CTAGTTTTGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCA---AGGGTTT-CAT 57627 Query 172320 AATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTA 172379 ||| || || || || |||||||||||||| || || ||| || | || | || | Sbjct 57626 AATTGGACGCTGAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTG 57567 Query 172380 CTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATAC 172439 |||||||| || |||||||| || ||| | || || || | |||||| Sbjct 57566 CTATGTGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGA------------- 57520 Query 172440 ACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAA 172499 || | | | ||| |||| ||| | || || | || || || | || ||| Sbjct 57519 --TG--GTGATGGGGCAA-ATACA---TTCCGGGCTTTTAACCCAACCCAAGCTGAGGAA 57468 Query 172500 ACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCA 172559 |||||| ||| | || |||||| | || ||||| || || ||||| | || ||||| Sbjct 57467 ACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 57408 Query 172560 AACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCA 172619 || ||| | | ||||| ||| ||||||| || ||||| || | ||| | |||| Sbjct 57407 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 57348 Query 172620 TCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAG 172679 || | || | || ||||| || | ||||| | || || ||||| || || || || Sbjct 57347 GCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAA 57288 Query 172680 ATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAAT 172739 || | ||||| ||||| || || ||||| || |||||||| || || ||||| | || Sbjct 57287 ATCCGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAAC 57228 Query 172740 GAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCA 172799 |||||||| | || |||||| | || ||||| || ||||| ||| || | ||||| Sbjct 57227 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 57168 Query 172800 GAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 || || || | || || || ||||| || ||| Sbjct 57167 GAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 57135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568075261060800