Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2381 102 9e-17 seq80314 93.3 4e-14 >seq2381 Length=21385 Score = 102 bits (112), Expect = 9e-17 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||||||||| ||||| ||||| | ||||| || | | ||||| || ||||| || || Sbjct 13969 CAAACATGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGT 14028 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAA 21590 || || |||||||| || | |||||| | ||| ||||| | |||| | ||| || || | Sbjct 14029 TAGTCCAGGCATTAAACCACGCTTTTTCAGCCAGAATATAG-CGCAGAAGCTTCCAGAGA 14087 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 |||| || || ||||| ||||||||||| || ||| || Sbjct 14088 AGAATATCCCTTCAACACAAGCAAATGCAATTATTCGCTC 14127 >seq80314 Length=1716 Score = 93.3 bits (102), Expect = 4e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 |||||| || ||||| ||||| | ||||| || | | ||||| |||||||| || || Sbjct 974 CAAACACGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGT 915 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAA 21590 || || |||||||| |||| |||||| | ||| ||||| | | || | || || || | Sbjct 914 TAGTCCAGGCATTAAACCTCGCTTTTTCAGCCAGAATATAG-CACATAAACTTCCAGAGA 856 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 |||| | || ||||| ||||||||||| || ||| || Sbjct 855 AGAATACTCCTTCAACACAAGCAAATGCAATTATTCGCTC 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529854843572800