Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2381 196 6e-45 seq33024 145 9e-30 seq80314 122 1e-22 seq100015 96.9 4e-15 seq6823 84.2 3e-11 >seq2381 Length=21385 Score = 196 bits (216), Expect = 6e-45 Identities = 572/876 (65%), Gaps = 15/876 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || || || ||||| |||||||| || |||| || ||||| Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| |||||||||| || |||||||| |||| || ||||||| || || | Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || |||||||| || || || ||||| |||||| || | ||||| || | | Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || | || || || ||| || || || ||||| || | || ||| Sbjct 13862 GCACACGGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATA 13921 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGC---AATAAAT-GTTTAAACATCAAACATGC 33308 | | || | || || |||| | | |||| | || ||| ||||||||| Sbjct 13922 CTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGAGAGTATAA----CAAACATGC 13977 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 ||||||||| || || || ||||||| | ||||| ||||| || || || ||||| || Sbjct 13978 GAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGG 14037 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||||| ||||||||||| ||||| ||||| | ||| |||||| ||||| || || Sbjct 14038 CATTAAACCACGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCC 14097 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGTATCCAC 33486 ||| || |||||| ||||| | || |||| | || || | | | |||||||| Sbjct 14098 TTCAACACAAGCAAATGCAATTATTCGCTCTGC--AAACGATTCCGAACCGTGTATCCAG 14155 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 | |||||||| ||||| || ||| || |||||||| | ||| ||||||| Sbjct 14156 CGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAAGAGA 14215 Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606 |||||| ||||| || ||| ||||| | | ||| ||||||||| ||| Sbjct 14216 CTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTCGGAA 14275 Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666 ||||||||||| || || || || || ||||| || | || || | | || | Sbjct 14276 TGAATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCACGCGCTTCAGGGAGTTGGATC 14335 Query 33667 TCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 || | || || || | |||||| || || |||||| ||| ||||| || Sbjct 14336 TCCTTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAAAGAAG 14395 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT---TCCAATCATTG 33783 || | || || | || || | || || || || ||| | | ||| | | Sbjct 14396 GCGAGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGTGTCGG 14455 Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843 | ||| |||| || |||||||| | ||||| || ||||| || || || || ||| Sbjct 14456 AGATCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTAC 14515 Query 33844 ATGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 || | |||||| | | |||| ||||||||| ||| Sbjct 14516 ATTTCCCAGATTTGAGGGTATTTGATTGGGAACATA 14551 >seq33024 Length=3557 Score = 145 bits (160), Expect = 9e-30 Identities = 578/907 (64%), Gaps = 7/907 (1%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || || ||||||||||||||||| ||||| | ||| || || | Sbjct 1029 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAAT 1088 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | ||| |||| ||| || || || || | | Sbjct 1089 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1148 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA-- 33190 || ||||| || || ||||| ||||| |||| | || | |||||| || | | Sbjct 1149 AACCTATCAGCAACAAATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCAAC 1208 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 | || || || || || || ||| || || || ||||| |||| | || Sbjct 1209 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCGATTTCCACCGCCTCTGAAACAA 1266 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 | | ||| || ||||||| || || | ||| |||||| |||| Sbjct 1267 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1326 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 |||| ||||| | |||||||||| | ||| | ||||| || || || || || |||| Sbjct 1327 AATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCCGGCA 1386 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 ||| || || || || ||||||||||| | ||| |||||| ||||| || |||| Sbjct 1387 TTAATCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTT 1446 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTT 33490 | || ||| || || | || || ||| | ||| | | | | | ||||| Sbjct 1447 CAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCGTCGATCCAGCGCA 1506 Query 33491 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33550 |||||||| ||||| || ||| || || || || | ||| || | | Sbjct 1507 AGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAATAAACCCG 1566 Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33610 |||||| | ||| |||| ||||| || | || | |||||||| ||||| | Sbjct 1567 ATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCGGAATGGA 1626 Query 33611 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 33670 | ||||| || || || ||||| ||||| || ||| || || | || || ||||| Sbjct 1627 TATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGAACTTCCT 1686 Query 33671 TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730 | || || || | ||| || ||| || |||||| || || || || || | Sbjct 1687 TCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAGAAGGCGA 1746 Query 33731 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT---TCCAATCATTGATAT 33787 || || | || |||| ||| || | || || | | ||| | | | || Sbjct 1747 GCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGACGTAAAT 1806 Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 | ||||| ||| |||||||| | ||||| || || || || || ||||| ||||| | Sbjct 1807 CGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATTT 1866 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGA 33907 |||||| | ||| ||||||||| || |||| || ||| ||||| || || | Sbjct 1867 CCCAGATTTGGGGGAATTTGATTGGGAACATGCAGAATCGATCTGGGTTTGGGGCGAGTA 1926 Query 33908 TGGGTTC 33914 |||||| Sbjct 1927 AGGGTTC 1933 >seq80314 Length=1716 Score = 122 bits (134), Expect = 1e-22 Identities = 302/455 (66%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || | ||||| ||||| |||||||| || |||| ||| ||||| Sbjct 1261 TTCTGATACTCCCCAATCCGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAAC 1202 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| |||||||||| || || ||||| |||| || ||||||| || || | Sbjct 1201 TCCATCCAATCAAACGGGTTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 1142 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || |||||||| || || || ||||| |||||| || | ||||| || | | Sbjct 1141 AACCTATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAAC 1082 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || | || || || ||| || || || ||||| || | || ||| Sbjct 1081 GCACACGGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATA 1022 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGA----TGCAATAAAT-GTTTAAACATCAAACATG 33307 | || | || || || ||| | ||| | | || ||| |||||| | Sbjct 1021 CTCTTTACCCTCTCCTCGCT-GGTCTTCTTCTTCAACAGAGAGTATAA----CAAACACG 967 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 |||||||||| || || || ||||||| | ||||| || || || || || ||||| | Sbjct 966 CGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCAG 907 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427 |||||| || |||||||| ||||| ||||| | | || |||||| ||||| | || Sbjct 906 GCATTAAACCTCGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAGAAGAATACTC 847 Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33462 |||| || |||||| ||||| | || |||| || Sbjct 846 CTTCAACACAAGCAAATGCAATTATTCGCTCTGCA 812 >seq100015 Length=1511 Score = 96.9 bits (106), Expect = 4e-15 Identities = 320/496 (65%), Gaps = 4/496 (1%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || || ||||||||||||||||| || || | ||| || || | Sbjct 937 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTCCCCTGCAACGAAATCAAT 996 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | ||| |||| ||| || || || || | | Sbjct 997 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1056 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA-- 33190 || ||||| || || || || ||||| |||||| || | |||||| || | | Sbjct 1057 AACCTATCAGCAACAAACTCAATATACTGACTCATCAACTCTCCATTCATCCCAACCAAC 1116 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 | || || || || || || ||| || ||||| || || || | | || Sbjct 1117 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCAATTTCCACTGCCTCCGAAACAA 1174 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 | | ||| || ||||||| || || | ||| |||||| |||| Sbjct 1175 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1234 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | || ||||| | |||||||||| | ||| | ||||| || || || || || |||| Sbjct 1235 AGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCA 1294 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 ||| || || || || ||||||||||| | ||| |||||| ||||| || |||| Sbjct 1295 TTAACCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTT 1354 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTT 33490 | || ||| || || | || || ||| | ||| | | | ||| ||||| Sbjct 1355 CAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCATCAATCCAGCGCA 1414 Query 33491 GAGCCCAATCGGCCTT 33506 |||||||||||||| Sbjct 1415 AGGCCCAATCGGCCTT 1430 >seq6823 Length=41093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || || | ||| || ||||| || |||||||| | | ||| | || | Sbjct 37526 GTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAAACCACCTCTGAGACATATAATGG 37585 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || ||| ||||| || | |||| | ||| || || |||||||| || | ||||| Sbjct 37586 TAAGTTGAAATGGCTGAATCAACATCCTCCTTG-TGGATGCCTACTGCAACTCTCATTAT 37644 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| || ||||| || || | ||| || | ||||||| ||| || | || | Sbjct 37645 CATGTGTTGTGGTCTCTCCACAACCTTCCCATTGACCTTCAACAGGTATGACCTCTCAAG 37704 Query 63791 AGTTTTAAAACCAAAATA 63808 ||||| ||||||||||| Sbjct 37705 GGTTTTGAAACCAAAATA 37722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620551033595200