Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq59535 136 4e-27 seq8115 118 1e-21 seq11074 116 4e-21 seq112514 102 8e-17 seq5402 86.0 6e-12 >seq59535 Length=2228 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || |||||||| |||| || ||| | |||||| |||| | ||||| Sbjct 1754 AAAATGCAGATCTTCGTAAAAACCCTAACCGGCAAAACAATCACCCTCGAGGTTGAATCC 1695 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | |||||| || || ||||||||||| || || || || Sbjct 1694 TCCGACACAATCGACAATGTCAAAACCAAAATCCAAGACAAAGAAGGAATCCCACCAGAC 1635 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | || || | || ||| |||||||||||||||| | | | || |||||| Sbjct 1634 CAACAACGTCTAATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACCCTCGCCGACTAC 1575 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| ||| ||||||| ||||| Sbjct 1574 AACATCCAGAAGGAATCCACTCTCCATCTCGTCCT 1540 >seq8115 Length=10241 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| ||||||| ||| | |||||| | || | ||||| Sbjct 7498 AAAATGCAGATCTTCGTGAAAACCCTAACTGGGAAAACAATCACCCTTGAGGTTGAATCC 7439 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | |||||| ||||| ||||||||||| || || || || Sbjct 7438 TCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGAATCCCACCAGAC 7379 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| | ||||| | || ||| |||||||||||||| | | | | | |||||| Sbjct 7378 CAACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGTACCCTAGCCGACTAC 7319 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || ||||||| ||||| Sbjct 7318 AACATCCAGAAGGAATCGACCCTCCATCTTGTCCT 7284 >seq11074 Length=8391 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 || |||||||| | || || ||||| ||||||| ||| | || ||| | ||| | ||| Sbjct 475 AAAAAAATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAA 534 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 ||| ||||| ||||| | |||||| ||||| ||||||||||| || || || Sbjct 535 TCATCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCT 594 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGA 26941 ||||||||| | || || | | || |||||||| ||||||| | | || | || ||| Sbjct 595 GATCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCG-TACTTTAGCCGA 653 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 || || || || |||||||||||| | ||||| || Sbjct 654 TTACAATATCCAGAAAGAATCTACTCTTCATCTTGT 689 >seq112514 Length=1387 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 || |||||||| | || || ||||| |||||||| ||| | || ||| | ||| | ||| Sbjct 618 AAAAAAATGCAGATATTCGTGAAAACCTTAACTGGTAAAACCATTACCTTAGAAGTTGAA 559 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 || | || || || || | |||||| |||||| || |||||||| || ||||| Sbjct 558 TCTAGTGATACTATAGATAATGTCAAAACTAAGATTCAAGATAAAGAAGGTATTCCTCCG 499 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 || |||||| | | |||| || ||| || || | ||||||| | | | | |||| Sbjct 498 GACCAACAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGTACGCTTGCCGAC 439 Query 26943 TATAACATTCAAAAAG 26958 || ||||||||||||| Sbjct 438 TACAACATTCAAAAAG 423 >seq5402 Length=17369 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| ||||||| || | || || ||||| | || | Sbjct 5473 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACAATTACTCTCGAAGTCGAGAGTTCC 5532 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| |||||| || || || || || ||||| || || Sbjct 5533 GACACCATTGACAATGTCAAAACCAAGATTCAGGATAAGGAGGGCATTCCTCCAGACCAG 5592 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| || | | || |||||||| || |||| ||| | || |||||| Sbjct 5593 CAAAGACTGATCTTTGCTGGGAAACAACTTGAGGATGGCCGAACTCTTGCTGATTATAAC 5652 Query 26949 ATTCAAAAAGAATCTAC 26965 ||||| ||||| ||||| Sbjct 5653 ATTCAGAAAGAGTCTAC 5669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476821225078400