Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq80314 113 1e-19 seq2381 109 1e-18 >seq80314 Length=1716 Score = 113 bits (124), Expect = 1e-19 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 |||||||||||| |||||||| | ||||| |||||| || ||||| || || ||| Sbjct 825 ATTGCATTTGCTTGTGTTGAAGGAGTATTCTTCTCTGGAAGTTTATGTGCTATATTCTGG 884 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 || ||||| || | | ||||| || ||||| || || |||||||||||| ||||| Sbjct 885 CTGAAAAAGCGAGGTTTAATGCCTGGACTAACCTTCTCTAATGAGTTAATTTCTCGAGAC 944 Query 22618 GAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 || || |||||| |||||| |||||| || |||| Sbjct 945 GAAGGGCTTCATTGCGATTTCGCGTGTTTGTTATA 979 >seq2381 Length=21385 Score = 109 bits (120), Expect = 1e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 || || || || || | |||||||||||| |||||||| || ||||| |||||| Sbjct 14136 TCGTTTGCAGAGCGAATAATTGCATTTGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGC 14077 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 || || || || || ||||| ||||| |||| | ||||| || ||||| || || || Sbjct 14076 TTCTGCGCTATATTCTGGCTGAAAAAGCGTGGTTTAATGCCTGGACTAACCTTCTCTAAC 14017 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 ||||||||| ||||| || || |||||| |||||| || ||| || |||| Sbjct 14016 GAGTTAATTTCTCGAGACGAAGGGCTTCATTGCGATTTCGCATGTTTGTTATA 13964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298214916637040