Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq60406 125 6e-24 seq5402 122 7e-23 seq29279 107 2e-18 seq59535 104 2e-17 seq11074 104 2e-17 seq36261 100 2e-16 seq112514 96.9 3e-15 seq20614 96.9 3e-15 seq8115 95.1 1e-14 seq67502 91.5 1e-13 seq2675 89.7 4e-13 seq3774 86.0 5e-12 >seq60406 Length=2202 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||||| || | ||||| | || |||||| | Sbjct 1556 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACAATTACTCTGGAGGTCGAGAGTTCC 1497 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| || ||| ||||| || ||||| ||||| || || Sbjct 1496 GACACCATTGACAATGTCAAAACCAAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 1437 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||||||||||| || |||| | ||| | ||||||||| Sbjct 1436 CAGAGGCTGATCTTCGCAGGCAAGCAACTTGAGGATGGCCGAACTCTGGCTGATTATAAC 1377 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| || || ||||| | ||| | | ||||| ||||| Sbjct 1376 ATTCAGAAAGAGTCGACTCTTCATCTTGTGCTTCGGTTGAGGGGAGG 1330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || |||||||| | |||||| |||| || ||| | Sbjct 1328 ATGCAGATTTTTGTGAAAACCTTGACTGGAAAGACCATTACCCTCGAGGTTGAGAGCTCT 1269 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || ||| || || ||||| || || || ||||| Sbjct 1268 GATACTATTGACAATGTCAAAACTAAAATTCAGGATAAGGAAGGTATCCCCCCAGATCAG 1209 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || ||||| || || || | | | | | | || |||||||| Sbjct 1208 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTA-CTTTGGCTGATTATAA 1150 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || || || || | ||||| ||| | | ||||| ||||| Sbjct 1149 CATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTTTGAGGGGAGG 1102 >seq5402 Length=17369 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||||| || | ||||| ||||||||||| | Sbjct 5473 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACAATTACTCTCGAAGTCGAGAGTTCC 5532 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| || || || ||||| ||||| || || Sbjct 5533 GACACCATTGACAATGTCAAAACCAAGATTCAGGATAAGGAGGGCATTCCTCCAGACCAG 5592 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || |||||||| | | || || ||||| || |||| | ||| | ||||||||| Sbjct 5593 CAAAGACTGATCTTTGCTGGGAAACAACTTGAGGATGGCCGAACTCTTGCTGATTATAAC 5652 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| ||||| |||| | ||| | | ||||| ||||| Sbjct 5653 ATTCAGAAAGAGTCTACCCTTCACCTTGTGCTTCGTTTGAGGGGAGG 5699 >seq29279 Length=3900 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | |||| | | || || |||| |||||| | Sbjct 2801 ATGCAAATCTTTGTGAAAACCCTTACTGACTAGACAATAACTCTCGAGGTCGAGAGTTCC 2742 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| | | |||||| |||||| || || || || || ||||| || || Sbjct 2741 GACACCATTCACAATGTCAAAACCAAGATTTAGGATAAGGAGGGTATTCCTCCAGACCAG 2682 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||||||||||| || |||| | ||| | || ||||| ||| Sbjct 2681 CAGAGGCTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCCTCGCTGATTACAAC 2622 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||||||||||| |||| | ||| | | ||||| || || Sbjct 2621 ATTAAAAAAGAATCTACTCTTCACCTTGTGCTTCGTTTGAGGGGTGG 2575 >seq59535 Length=2228 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || |||||||| |||| || ||| | || ||| |||| || || || Sbjct 1754 AAAATGCAGATCTTCGTAAAAACCCTAACCGGCAAAACAATCACCCTCGAGGTTGAATCC 1695 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | |||||| || || ||||||||||| || || || || Sbjct 1694 TCCGACACAATCGACAATGTCAAAACCAAAATCCAAGACAAAGAAGGAATCCCACCAGAC 1635 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | || || | || ||| || ||||||||||||| | | | | || ||| || Sbjct 1634 CAACAACGTCTAATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACCCTCGCCGACTAC 1575 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 1574 AACATCCAGAAGGAATCCAC 1555 >seq11074 Length=8391 Score = 104 bits (114), Expect = 2e-17 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 23982 CCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||||| |||||||| | || || ||||| ||||||| ||| | || ||| | ||||| Sbjct 473 CCAAA-AAAATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTT 531 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 || | ||||| ||||| | |||||| ||||| |||||||||||||| || Sbjct 532 GAATCATCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCA 591 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG- 24160 || |||||||| | || || | | || || ||||| ||||||| | || | || Sbjct 592 CCTGATCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCG-TACTTTAGC 650 Query 24161 CGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||||| || || || ||||||||||| ||||| | || ||| Sbjct 651 CGATTACAATATCCAGAAAGAATCTACTCTTCATCTTGTTTTA 693 >seq36261 Length=3302 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||||| || | ||||| |||| || ||| | Sbjct 2355 ATGCAAATCTTCGTCAAGACCCTAACTGGCAAGACCATTACTCTCGAGGTTGAGAGTTCC 2414 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| || ||||| ||||| || || Sbjct 2415 GACACCATTGACAATGTCAAAACCAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 2474 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || |||||||| | | |||||||| || || |||| | ||| | | ||||||||| Sbjct 2475 CAAAGACTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGAACCCTTGCTGATTATAAC 2534 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | ||||| ||| Sbjct 2535 ATCCAGAAGGAGTCCACCCTCCATTTGGTG 2564 >seq112514 Length=1387 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 || |||||||| | || || ||||| |||||||| ||| | |||||| | ||||| || Sbjct 618 AAAAAAATGCAGATATTCGTGAAAACCTTAACTGGTAAAACCATTACCTTAGAAGTTGAA 559 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 | | || || || || | |||||| |||||| || |||||||| || ||||| Sbjct 558 TCTAGTGATACTATAGATAATGTCAAAACTAAGATTCAAGATAAAGAAGGTATTCCTCCG 499 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 || ||||| | |||||| || ||| ||||| | ||||||| | | | ||| Sbjct 498 GACCAACAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGTACGCTTGCCGAC 439 Query 24165 TATAACATTCAAAAAG 24180 || ||||||||||||| Sbjct 438 TACAACATTCAAAAAG 423 >seq20614 Length=5371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || || | ||||| |||| |||||| Sbjct 2091 ATGCAAATATTTGTCAAGACCCTTACCGGCAAGACCATTACTCTCGAGGTCGAGAGTTCA 2150 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| || ||||| ||||| ||||| Sbjct 2151 GACACCATTGACAATGTCAAGACTAAGATTCAGGACAAGGAGGGCATTCCTCCAGATCAG 2210 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | || ||||| || ||||||| | | | | ||||||||| Sbjct 2211 CAGAGACTGATCTTTGCAGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCAGATTATAAC 2270 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| || ||||| |||| Sbjct 2271 ATCCAAAAGGAGTCTACGCTTCA 2293 >seq8115 Length=10241 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| ||||||| ||| | || ||| | || || || || Sbjct 7498 AAAATGCAGATCTTCGTGAAAACCCTAACTGGGAAAACAATCACCCTTGAGGTTGAATCC 7439 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | |||||| ||||| ||||||||||| || || || || Sbjct 7438 TCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGAATCCCACCAGAC 7379 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 |||||| | || || | || ||| || ||||||||||| | | | | | | ||| || Sbjct 7378 CAACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGTACCCTAGCCGACTAC 7319 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 7318 AACATCCAGAAGGAATCGAC 7299 >seq67502 Length=1962 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||||| || | ||||| |||| || ||| Sbjct 1594 ATGCAAATCTTCGTCAAGACCCTAACTGGCAAGACCATTACTCTCGAGGTTGAGAGTTCT 1653 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| || ||||| ||||| ||||| Sbjct 1654 GACACCATTGACAATGTCAAAACCAAGATTCAGGACAAGGAGGGCATTCCTCCAGATCAG 1713 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | | |||||||| || || |||| | | | | | ||||||||| Sbjct 1714 CAAAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGATTATAAC 1773 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | ||||| ||| Sbjct 1774 ATCCAGAAGGAGTCCACCCTCCATTTGGTG 1803 >seq2675 Length=17436 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||| ||| ||||| | || || ||||| ||||| || || |||| ||||| ||||||| Sbjct 15344 CAATCAAGATGCAGATATTCGTTAAAACCTTAACCGGCAAGACGATAACCATGGAAGTCG 15403 Query 24043 AGGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 | ||| | ||| | ||| | | | || || || |||||||| ||||| || Sbjct 15404 AA-CCATCTGACTCAATCAACAACATTAAGTCCAAAATCCAGGACAAAGAGGGCATCCCA 15462 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161 || || ||||| | || || | | |||||||||||| ||||||||| ||| || ||| Sbjct 15463 CCTGACCAACAACGTCTAATATTTGCCGGCAAGCAACTTGAAGATGACCGAACTGT-AGC 15521 Query 24162 -GATTATAACATTCAAAAAGAATCTAC 24187 || || ||||| || || ||||| || Sbjct 15522 AGACTACAACATCCAGAAGGAATCCAC 15548 >seq3774 Length=25925 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | || || |||| |||||| Sbjct 7910 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAAACTATCACTCTCGAGGTCGAGAGTTCT 7969 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| || ||| ||||| ||| | || || || || || Sbjct 7970 GACACCATCGACAATGTCAAAACCAAAATTCAGGACAAGGAATGAATCCCCCCAGACCAG 8029 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | | || ||||||||||| |||| | | | | ||||| ||| Sbjct 8030 CAAAGGCTGATCTTTGCTGGAAAGCAACTCGAGGATGGTCGTACCCTTGCTGATTACAAC 8089 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || ||||| | ||||||||| Sbjct 8090 ATCCAGAAGGAGTCTACCCTCCATTTAGTG 8119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428323594896600