Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5402 105 6e-18 seq60406 102 7e-17 seq35076 95.1 1e-14 seq36261 86.0 5e-12 seq16687 86.0 5e-12 seq9218 86.0 5e-12 seq31228 84.2 2e-11 seq20614 82.4 6e-11 seq12130 82.4 6e-11 >seq5402 Length=17369 Score = 105 bits (116), Expect = 6e-18 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| ||||| ||||| || || || || || ||||| ||||| || |||| | Sbjct 5473 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACAATTACTCTCGAAGTCGAGAGTTC- 5531 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| ||| |||| || ||| || ||| ||||| || ||| | || || Sbjct 5532 -CGACACCATTG-ACAATGTCAAAACCAAGATTCAGGATAAGGAGGGCATTCCTCCAGAC 5589 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| || |||||| | || |||| | ||| | || |||||| Sbjct 5590 CAGCAAAGACTGATCTTTGCTGGGAAACAACTTGAGGATGGCCGAACTCTTGCTGATTAT 5649 Query 115463 AACATTCAAAAAGAGTCTAC 115482 |||||||| ||||||||||| Sbjct 5650 AACATTCAGAAAGAGTCTAC 5669 >seq60406 Length=2202 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| ||||| | || ||||| ||||||||| |||| ||| | Sbjct 1328 ATGCAGATTTTTGTGAAAACCTTGACTGGAAAGACCATTACCCTCGAGGTTGAGAGCTCT 1269 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| |||| || ||| |||||| ||||| ||||| ||||| ||||| Sbjct 1268 GATACTATTG-ACAATGTCAAAACTAAAATTCAGGATAAGGAAGGTATCCCCCCAGATCA 1210 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||| | ||| || || || | || || | | || |||| |||||||| Sbjct 1209 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACTTTGGCTGATTATAA 1150 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || || ||||| || | ||| ||||| | | ||| | ||||| Sbjct 1149 CATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTTTGAGGGGAGG 1102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| ||||| ||||| || || || || || ||||| | || || |||| | Sbjct 1556 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACAATTACTCTGGAGGTCGAGAGTTC- 1498 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| ||| |||| || ||| |||||| || || || ||| | || || Sbjct 1497 -CGACACCATTG-ACAATGTCAAAACCAAAATTCAGGACAAGGAGGGCATTCCTCCAGAC 1440 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | || ||||| ||| | || |||| | ||| |||| |||||| Sbjct 1439 CAGCAGAGGCTGATCTTCGCAGGCAAGCAACTTGAGGATGGCCGAACTCTGGCTGATTAT 1380 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| |||||||| ||| | ||| | ||| | | ||| | ||||| Sbjct 1379 AACATTCAGAAAGAGTCGACTCTTCATCTTGTGCTTCGGTTGAGGGGAGG 1330 >seq35076 Length=3390 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||||||||| || || |||||||| ||| | ||| ||| | Sbjct 1617 ATGCAGATTTTTGTCAAAACGCTGACCGGGAAAACCATCACCCTTGAAGTTGAGAGCTCA 1558 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| || ||| ||||| ||||| | || || ||| Sbjct 1557 GACACCATTGATAATGTCAAAACCAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAG 1498 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| || || | ||| || || ||| | || |||| | ||| |||| || || ||| Sbjct 1497 CAAAGGCTGATCTTTGCCGGAAAGCAACTTGAGGATGGCCGTACCCTGGCTGACTACAAC 1438 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || || |||||||| || | ||| ||||| Sbjct 1437 ATCCAGAAAGAGTCCACCCTCCATTTGGTG 1408 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| |||||||| || || || || || |||||||| |||| || |||| | Sbjct 2073 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAGACCATTACTCTCGAGGTCGAGAGTTCT 2014 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || ||| |||||| || || || ||| | || || Sbjct 2013 GATACAATC---GACAATGTTAAAACCAAAATTCAGGACAAGGAGGGCATTCCTCCAGAC 1957 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| || || | ||| ||||| || | || || | | ||| | || ||||| Sbjct 1956 CAGCAAAGGCTGATCTTTGCAGGCAAGCAGCTTGAGGACGGCCGAACACTCGCTGATTAC 1897 Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||||||||| ||| | ||| Sbjct 1896 AACATTCAAAAAGAGTCCACTCTCCAT 1870 >seq36261 Length=3302 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||| || || || || || |||||||| |||| ||| | Sbjct 2355 ATGCAAATCTTCGTCAAGACCCTAACTGGCAAGACCATTACTCTCGAGGTTGAGAGTTCC 2414 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || ||| || ||| || || || ||| | || || || Sbjct 2415 GACACCATTG-ACAATGTCAAAACCAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCA 2473 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||| || | ||| ||||| || | || |||| | |||| | || |||||||| Sbjct 2474 GCAAAGACTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGAACCCTTGCTGATTATAA 2533 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||| || || ||||| || | ||| ||||| Sbjct 2534 CATCCAGAAGGAGTCCACCCTCCATTTGGTG 2564 >seq16687 Length=6431 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || ||||| || ||||| ||||||||| | ||| ||| | Sbjct 1396 ATGCAGATTTTCGTGAAGACGCTTACCGGAAAGACCATTACCCTTGAAGTTGAGAGCTCG 1337 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || ||| || || |||||| | ||| || || Sbjct 1336 GACACCATTG-ACAATGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCA 1278 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||| || | ||| || || || | || || | | || |||| |||||||| Sbjct 1277 GCAAAGACTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACTTTGGCTGATTATAA 1218 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||| || || ||||| || | ||| ||||| Sbjct 1217 CATCCAGAAGGAGTCCACCCTCCATTTGGTG 1187 >seq9218 Length=18002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || || || || ||||| |||||| | ||| || | Sbjct 14885 ATGCAGATTTTCGTCAAGACTCTAACTGGGAAAACTATTACCCTGGAAGTCGAAAGCTCG 14826 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || ||| || ||||||||||| | || ||||| Sbjct 14825 GACACCATTG-ACAATGTGAAGACAAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCA 14767 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | ||| || |||||||| ||||| | ||| | || ||||| || Sbjct 14766 GCAGAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGGCGTACCCTAGCTGATTACAA 14707 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || ||||| ||| | ||| ||||| Sbjct 14706 TATTCAGAAGGAGTCGACTCTCCATTTGGTG 14676 >seq31228 Length=3734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| |||| |||| || ||| || ||| ||||| |||||| |||| ||||| Sbjct 3715 GACACCGTTG-ACAATGTTAAAACTAAGATTCAGGATAAGGAAGGCATCCCACCGGATCA 3657 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||| | ||| || || || | || |||| | || ||||||||||||| Sbjct 3656 GCAAAGGCTTATCTTTGCCGGTAAGCAGCTGGAGGATGGCCGCACTTTGGCCGATTATAA 3597 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| || |||||||| Sbjct 3596 CATTCAGAAGGAGTCTAC 3579 >seq20614 Length=5371 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| |||||||| || || || || || |||||||| |||| || |||| || Sbjct 2091 ATGCAAATATTTGTCAAGACCCTTACCGGCAAGACCATTACTCTCGAGGTCGAGAGTTCA 2150 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | |||| ||| |||| || || || ||| || || || ||| | || ||| Sbjct 2151 G--ACACCATTG-ACAATGTCAAGACTAAGATTCAGGACAAGGAGGGCATTCCTCCAGAT 2207 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | ||| || || || | ||||||| | || | || |||||| Sbjct 2208 CAGCAGAGACTGATCTTTGCAGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCAGATTAT 2267 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||| ||||| |||||||| Sbjct 2268 AACATCCAAAAGGAGTCTAC 2287 >seq12130 Length=7920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| || || ||||| || | || ||| |||| Sbjct 5977 ATGCAAATATTTGTCAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTCGAGAGCAGC 5918 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || || || || || || | ||| ||||| Sbjct 5917 GACACAATTG-ACAATGTCAAGACTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCA 5859 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||||| || || || || | ||||||| ||| | || || || || Sbjct 5858 GCAAAGGCTTATTTTCGCTGGAAAGCAGCTCGAAGATGGTCGCACCCTCGCTGACTACAA 5799 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 || || || ||||| ||| | ||| |||||||| Sbjct 5798 TATCCAGAAGGAGTCAACTCTCCATTTGGTGTTG 5765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423748816446400