Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq35076 113 4e-20 seq51823 104 2e-17 seq31228 104 2e-17 seq16687 100 2e-16 seq29279 95.1 1e-14 seq59535 89.7 4e-13 seq12130 84.2 2e-11 seq3774 82.4 6e-11 >seq35076 Length=3390 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||| || |||||||| || || ||||||||||| || Sbjct 1390 CCCACCTCTCAGACGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGC 1449 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | | ||||| | ||| || || ||| | || |||| || |||||| ||| Sbjct 1450 CAGGGTACGGCCATCCTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCCGGAGG 1509 Query 16828 CACGCCCTCTTTGTCGGCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || ||| ||| | || || | | | ||||| | ||| Sbjct 1510 AATACCTTCCTTATCCTGAATCTTGGTT-TTGACATTATCAATGGTGTCTGAGCTCTCAA 1568 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1569 CTTCAAGGGTGATGGTTTTCCCGGTCAGCGTTTTGACAAAAATCTGCAT 1617 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||| ||||| || || || ||||| |||| || | |||||||| || Sbjct 1187 TGGAGCGTGGATTCCTTCTGAATATTATAGTCAGCCAAAGTGCGCCCATCCTCCAACTGC 1246 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| || || ||| | || || ||||| |||| | Sbjct 1247 TTCCCTGCAAAGATCAACCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGGATTTTC 1306 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | |||||||| ||| ||||| ||||||||| || ||||| Sbjct 1307 GTCTTAACATTATCGACAGTGTCCGAACTCTCAACTTCCAGGGTGATGGTCTTCCCGGTA 1366 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||||||||| Sbjct 1367 AGAGTTTTCACGAAAATCTGCAT 1389 >seq51823 Length=2487 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | ||| || ||||||||||| || ||||||||||| || Sbjct 1571 CCACCACGTAGACGGAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCG 1512 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | || ||||| || ||||||||| ||| ||||| || Sbjct 1511 AGTGTTCGGCCGTCTTCTAGCTGCTTGCCAGCGAAAATAAGCCTCTGCTGGTCTGGGGGA 1452 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| |||| ||| || | | | | |||||| ||| Sbjct 1451 ATTCCCTCCTTGTCCTGGATTTTAGTCTTGACGTTGTCAATGGTGTCGGAACTCTCGACC 1392 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| ||||| ||||||| || ||||||||||||||||| Sbjct 1391 TCAAGGGTGATTGTTTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 1345 >seq31228 Length=3734 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| || | || |||| || ||||| |||||||| || ||||| |||||||| Sbjct 3092 CCCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTAGACTCCTTCTGGATGTTATAGTCGGC 3151 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || ||||||||| || || || ||| | || | || || ||||| || Sbjct 3152 CAAAGTACGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAACCTTTGCTGGTCTGGGGG 3211 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| ||||| || |||| ||| || | | | | |||||| | ||| Sbjct 3212 GATACCCTCCTTGTCTTGGATCTTTGT--CTTGACATTGTCAATAGTGTCCGAGCTCTCA 3269 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||| || |||||||| || |||||||||||||| Sbjct 3270 ACTTCAAGGGTGATGGTTTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 3319 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 16740 TGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCG 16799 |||||||||| || |||||||||||||||| ||| | ||||||| || || || | Sbjct 2896 TGGACTCCTTCTGAATGTTGTAGTCGGCCAGGGTACGACCATCCTCCAGCTGCTTTCCTG 2955 Query 16800 CATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-CGGCAATTTGCTGCTTC 16858 | | || | || || || || || | ||| || |||| | | | |||| | |||| Sbjct 2956 CGAAGATCAACCTTTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGT-CTTC 3014 Query 16859 ACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTT 16918 || | | | | |||||| | ||| ||| | ||||||||| || ||||| || || Sbjct 3015 ACATTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCGGTAAGGGTC 3074 Query 16919 TTGACAAAAATCTGCAT 16935 || |||||||||||||| Sbjct 3075 TTTACAAAAATCTGCAT 3091 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || ||||||||| ||||| ||||| |||| || | ||||||||| || Sbjct 3345 TGCAGGGTACTCTCCTTTTGGATGTTATAGTCTGCCAAAGTACGGCCGTCCTCCAGCTGC 3404 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| || || || ||| | ||||| || || ||||| Sbjct 3405 TTACCAGCAAAGATGAGCCTTTGCTGATCTGGAGGAATACCCTCCTTATCCTGAATTTTG 3464 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CGTT-TCCACGGTGATGGTTTTTCCGG 16910 ||| || | | | | ||||| || |||| || || | ||| ||||| ||||| | Sbjct 3465 GTCTTGACATTGTCAATTGTGTC--CGAGCTCTCGACCTCAAGGGTAATGGTCTTTCCAG 3522 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| |||||||||||||| Sbjct 3523 TCAGGGTTTTCACAAAAATCTGCAT 3547 >seq16687 Length=6431 Score = 100 bits (110), Expect = 2e-16 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || |||||||| |||||||||||||| |||| || | ||||| Sbjct 1413 AGGACAAGATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGGCCGTCC 1472 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || |||||| | ||||||| || ||||| ||| | |||||| ||||| Sbjct 1473 TCCAACTGCTTACCCGCAAAGATAAGCCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 1532 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG-TTTCCACGGTGATG 16900 ||| ||| | ||| || | | | | ||||| ||| |||| || || | || ||| Sbjct 1533 TGAATCTTGGT-CTTGACATTGTCAATAGTGT--CCGAGCTCTCGACCTCAAGAGTAATG 1589 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || ||||| || || ||||| Sbjct 1590 GTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCAT 1624 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||| || || |||| || | ||||| Sbjct 1185 AGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAAAGTGCGGCCGTCC 1244 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| | || || | || ||||| || | ||| || ||||| Sbjct 1245 TCAAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 1304 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| ||| | ||| || | | | | ||||| | ||| ||| | ||| ||||| Sbjct 1305 TGAATCTTGGT-CTTGACATTGTCAATGGTGTCCGAGCTCTCAACTTCAAGGGTAATGGT 1363 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| ||||| || || ||||||||||| Sbjct 1364 CTTTCCGGTAAGCGTCTTCACGAAAATCTGCAT 1396 >seq29279 Length=3900 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| ||| | || |||| ||| || ||||||||||| || ||||||||||| || Sbjct 2120 CCGCCTCTTAGACGAAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCA 2179 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||||||| || || || ||| |||| | || ||| | || || Sbjct 2180 AGGGTCCGACTATCCTCCAACTGCTTTCCAGCA-AAATCAACCTCTGCTAATCTGGGGGA 2238 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| |||| | |||||| | | | | |||||| | ||| | Sbjct 2239 ATGCCTTCCTTGTCCTGGATTTTCGTCTTCACATTGTCAATAGTGTCTGAGCTCTCAACT 2298 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || ||||| || || || |||||||||||||| Sbjct 2299 TCAAGGGTTATGGTCTTCCCGGTAAGGGTCTTTACAAAAATCTGCAT 2345 >seq59535 Length=2228 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || |||||||||||||| | ||| | | || Sbjct 1540 AGGACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCATCT 1599 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||| || || | || || || |||||||| || | || |||||||| Sbjct 1600 TCGAGTTGTTTTCCGGCGAAGATTAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCT 1659 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | |||| | || || | | | | |||||| || || || | |||||| || Sbjct 1660 TGGATTTTGGT-TTTGACATTGTCGATTGTGTCGGAGGATTCAACCTCGAGGGTGATTGT 1718 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 ||| ||||| || ||||| || || ||||||||||| Sbjct 1719 TTTGCCGGTTAGGGTTTTTACGAAGATCTGCATTTT 1754 >seq12130 Length=7920 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || |||||||||||||| |||||||||||||| Sbjct 1193 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCG 1252 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || | |||||| || ||| | || | || || ||||| || Sbjct 1253 AGGGTTCGGCCATCTTCAAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGGGGA 1312 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || |||| | || || | | | |||||| | ||| Sbjct 1313 ATTCCCTCTTTGTCTTGAATCTTTGTT--TTGACATTATCGATTGTGTCGGAGCTCTCAA 1370 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || ||||||| || || || || || ||||| Sbjct 1371 CCTCGAGAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 1419 >seq3774 Length=25925 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| || |||||||| |||| ||| | |||||||| || Sbjct 8340 TGGAGGGTGGATTCCTTTTGAATATTGTAGTCAGCCAAGGTGCGCCCATCCTCCAACTGC 8281 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG-GCAATTTG 16851 || || ||| | || | || ||| || || || | || |||||||| | | |||| Sbjct 8280 TTCCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCCTGGATTTTG 8221 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | ||| || | | | | ||||| ||| ||||| ||||||||| || ||||| Sbjct 8220 GT-CTTAACATTGTCAATGGTGTCAGAACTCTCAACTTCCAGGGTGATGGTCTTCCCGGT 8162 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || || || || ||||||||||| Sbjct 8161 AAGGGTCTTCACGAAAATCTGCAT 8138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403568783282800