Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2381 197 2e-45 seq33024 132 6e-26 seq80314 114 2e-20 seq100015 98.7 1e-15 seq6823 89.7 6e-13 >seq2381 Length=21385 Score = 197 bits (218), Expect = 2e-45 Identities = 580/880 (66%), Gaps = 23/880 (3%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || || || || || || || || ||||| |||||||| || |||| | ||||| Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| || || || |||||||| |||| || ||||||| || || | Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 || ||||| || ||||| || ||||| |||||| || | ||||| || | | Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 32550 TTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | || | || | | |||| || ||| || || || ||||| || | || | Sbjct 13862 GCACACGGTAACGCGTCACA--AACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTA 13919 Query 32608 TAGATCTTACTGTTTCTTCACTCGGTGGATAC---AATAAAT-GTTTAAACATCAAACAT 32663 || | | ||| | || || |||| | | |||| | || ||| ||||||| Sbjct 13920 TACTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGAGAGTATAA----CAAACAT 13975 Query 32664 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 32723 ||||||||||| || || || ||||||| | |||||| ||||| || || || ||||| Sbjct 13976 GCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCA 14035 Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAAT 32782 ||||||| ||||||||||| ||||| ||||| | |||| || |||||| ||||| || Sbjct 14036 GGCATTAAACCACGCTTTTTCAGCCAGAATATAG-CGCAGAAGCTTCCAGAGAAGAATAT 14094 Query 32783 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGTATC 32840 ||||| || ||||| ||||| | || |||| | || || | | | |||||| Sbjct 14095 CCCTTCAACACAAGCAAATGCAATTATTCGCTCTGC--AAACGATTCCGAACCGTGTATC 14152 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 || | |||||||| ||||| || ||| || || || || | |||| |||| Sbjct 14153 CAGCGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAAG 14212 Query 32901 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 32960 ||| |||||| ||||| || ||| ||||||| | ||| ||||||||| Sbjct 14213 AGACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTCG 14272 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTG 33019 |||||||||||||| || || ||||| || ||||| || ||| | || || | | || Sbjct 14273 GAATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCA-CGCGCTTCAGGGAGTTG 14331 Query 33020 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33079 | || | || || || | |||||| || || |||||| ||| ||||| Sbjct 14332 GATCTCCTTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAAA 14391 Query 33080 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT---TCCAATC 33136 || || | || || | || || | || || || || ||| | | ||| | Sbjct 14392 GAAGGCGAGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGTG 14451 Query 33137 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33196 || ||| |||| || |||||||| | ||||| || ||||| || || || || Sbjct 14452 TCGGAGATCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTT 14511 Query 33197 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 ||||| | |||||| | | | |||| ||||| || ||| Sbjct 14512 GTACATTTCCCAGATTTGAGGGTATTTGATTGGGAACATA 14551 >seq33024 Length=3557 Score = 132 bits (146), Expect = 6e-26 Identities = 397/607 (65%), Gaps = 7/607 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| |||||| |||||||| ||||||| |||||||||| | ||| || ||||| || | Sbjct 1312 ACAACAAACAGGCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1371 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || || || ||||||| || || || || ||||||||||| | |||| || |||| Sbjct 1372 AGGTAAGCCCCGGCATTAATCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCA 1430 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || ||||| || ||||| || || || || | || || ||| | ||| | | | Sbjct 1431 GAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCG 1490 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 | | ||||| |||||||| ||||| || ||| || || ||||| | | Sbjct 1491 CCGTCGATCCAGCGCAAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACA 1550 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT-CAATCAAAAGACT 32950 ||| || | | |||||| | ||| |||| || || | |||| | ||| Sbjct 1551 GCACGGAATAAACCCGATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAG-GA 1609 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 |||||||| ||||| || ||||| || || |||||||| ||||| || ||| || || Sbjct 1610 GTACATTTCGGAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTC 1669 Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 | || || ||||| | || || || | ||| || ||| || |||||| Sbjct 1670 AGGAAGTTGAACTTCCTTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGA 1729 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT- 33129 || || || || || | || || | || |||| ||| || | || || | | Sbjct 1730 TGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTC 1789 Query 33130 --TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 ||| | | | ||| ||||| ||| |||||||| | ||||| || || || || Sbjct 1790 GGACCAGTGACGTAAATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTC 1849 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 33247 || ||||| ||||| | |||||| | | ||| ||||| || || |||| || Sbjct 1850 GGCTTTTTTGTACATTTCCCAGATTTGGGGGAATTTGATTGGGAACATGCAGAATCGATC 1909 Query 33248 TGGATTT 33254 ||| ||| Sbjct 1910 TGGGTTT 1916 >seq80314 Length=1716 Score = 114 bits (126), Expect = 2e-20 Identities = 306/458 (67%), Gaps = 16/458 (3%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || || || || || | ||||| ||||| |||||||| || |||| || ||||| Sbjct 1261 TTCTGATACTCCCCAATCCGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAAC 1202 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| || || || || ||||| |||| || ||||||| || || | Sbjct 1201 TCCATCCAATCAAACGGGTTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 1142 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 || ||||| || ||||| || ||||| |||||| || | ||||| || | | Sbjct 1141 AACCTATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAAC 1082 Query 32550 TTA-ACTGGAA-GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | || | || | | |||| || ||| || || || ||||| || | || | Sbjct 1081 GCACACGGTAACGCGTCACA--AACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTA 1024 Query 32608 TAGATCTTACTGTTTCTTCACTCGGTGGA----TACAATAAAT-GTTTAAACATCAAACA 32662 || |||| | || || || ||| | ||| | | || ||| |||||| Sbjct 1023 TACTCTTTACCCTCTCCTCGCT-GGTCTTCTTCTTCAACAGAGAGTATAA----CAAACA 969 Query 32663 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 32722 ||||||||||| || || || ||||||| | |||||| || || || || || ||||| Sbjct 968 CGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCC 909 Query 32723 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAA 32781 ||||||| || |||||||| ||||| ||||| | | || || |||||| ||||| | Sbjct 908 AGGCATTAAACCTCGCTTTTTCAGCCAGAATATAG-CACATAAACTTCCAGAGAAGAATA 850 Query 32782 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 32819 |||||| || ||||| ||||| | || |||| || Sbjct 849 CTCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA 812 >seq100015 Length=1511 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| |||||| ||||| || ||||||| |||||||||| | ||| || ||||| || | Sbjct 1220 ACAACAAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1279 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || || || ||||||| || || || || ||||||||||| | |||| || |||| Sbjct 1280 AGGTAAGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCA 1338 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || ||||| || ||||| || || || || | || || ||| | ||| | | | Sbjct 1339 GAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCG 1398 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 ||| ||||| |||||||||||||| || ||| || || ||||| | | Sbjct 1399 CCATCAATCCAGCGCAAGGCCCAATCGGCCTTGCGCTTGACAGCGGGGATAGTCTCAACA 1458 Query 32892 GCA 32894 ||| Sbjct 1459 GCA 1461 >seq6823 Length=41093 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || || | ||| || ||||| ||||||||||| | | ||| | || | Sbjct 37526 GTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAAACCACCTCTGAGACATATAATGG 37585 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || ||| ||||| || | |||| | ||| || || |||||||| || | ||||| Sbjct 37586 TAAGTTGAAATGGCTGAATCAACATCCTCCTTG-TGGATGCCTACTGCAACTCTCATTAT 37644 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || ||||| || || | ||| || | ||||||| ||| || | || | Sbjct 37645 CATGTGTTGTGGTCTCTCCACAACCTTCCCATTGACCTTCAACAGGTATGACCTCTCAAG 37704 Query 63646 AGTTTTAAAACCAAAATA 63663 ||||| ||||||||||| Sbjct 37705 GGTTTTGAAACCAAAATA 37722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631194734512000