Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1 598 5e-166 >seq1 Length=146306 Score = 598 bits (662), Expect = 5e-166 Identities = 735/997 (74%), Gaps = 8/997 (1%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 |||||| | ||| | ||| ||| | ||||| ||||| | || |||||||| | Sbjct 87866 CTTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTT 87925 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | ||||| ||||| || || | || ||| | || || | Sbjct 87926 GATGATCCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTC 87984 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || ||||| || || | || |||||| | || || |||| Sbjct 87985 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 88044 Query 166232 ACATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTGGTCTTCACTTCTATCC 166289 | || || |||||||| || | || || || || || || || | ||||| ||||| Sbjct 88045 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGGTTGCACTTTTATCC 88102 Query 166290 CATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGT 166349 || |||||||||||||| ||||||| ||| | || || |||||||||| |||| | Sbjct 88103 AATATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAAT 88162 Query 166350 AGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTA 166409 || | |||||| | | || | | || ||||||||||| |||||| | || Sbjct 88163 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTT 88222 Query 166410 CCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATC 166469 ||| || |||||||||||||||||| || ||||| || || || ||||| || || | Sbjct 88223 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTAC 88282 Query 166470 CGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGG 166529 || || ||| || |||| || |||||||||| ||| ||||| | ||||| || || Sbjct 88283 TGCGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 88342 Query 166530 TATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCA 166589 || ||| || ||||||| |||| |||| ||||| || |||||||||||||| ||||| Sbjct 88343 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 88402 Query 166590 CCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCA 166649 ||| || || ||| |||||||||| ||||||||||| || || || || || ||||| Sbjct 88403 CCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 88462 Query 166650 CGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACT 166708 || | || ||||| | | | | || | || ||||| |||| ||| ||| || Sbjct 88463 TGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 88521 Query 166709 ATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACT 166768 | ||||||| || |||||||| ||||| || || || ||||| |||||||||||||| | Sbjct 88522 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATT 88581 Query 166769 TCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCC 166828 | ||||| | ||||||||||| ||| ||||| || ||||| || | ||||||||| Sbjct 88582 TTGGTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCT 88641 Query 166829 TCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCAT 166888 | || || ||||| || || ||||| |||||||||||| | ||| ||||||| ||||| | Sbjct 88642 TAGCTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGT 88701 Query 166889 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 166948 ||||| | || |||||||| |||||||| || | | ||| |||| |||||||| | | Sbjct 88702 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 88761 Query 166949 ACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTA 167008 | |||||||| ||| || | ||||||||| || ||||||||||| ||||| || |||| Sbjct 88762 ATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 88821 Query 167009 ATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||||||| ||||||||||| || | ||||||| ||| Sbjct 88822 ATGCTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858 Score = 558 bits (618), Expect = 4e-154 Identities = 737/1018 (72%), Gaps = 8/1018 (1%) Strand=Plus/Minus Query 167299 GTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGG 167358 ||||||| | ||||||||||| | | ||||| || || ||||| || |||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 167359 ATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTT 167418 || | || ||||| ||||||| | || | || || ||| |||| || |||||||| Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 167419 TGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATT 167474 ||| ||| ||||||||||| |||||||| |||| | ||| ||| ||| |||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCC---AGTTCCTATTTGGAAGGCTGC-AATT 57977 Query 167475 TTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTT 167534 | | || ||||| || || ||||||||| | | | | || ||| | | | || | Sbjct 57976 TCTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGT 57917 Query 167535 GGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTT 167594 |||||||||| | || || ||||| | | ||||| || | || || || ||| ||| Sbjct 57916 GGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTT 57857 Query 167595 TTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAA 167654 |||| || || || || || || | || ||||| |||||| | || ||||| || | Sbjct 57856 TTGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTG 57797 Query 167655 GTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCT 167714 | || || | || ||||| ||||| || || || ||||| || |||||||| | Sbjct 57796 CTCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTT 57737 Query 167715 TTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGT 167774 |||| ||||| || || || ||||| || || ||||| ||||||||||||| || | Sbjct 57736 TTGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTT 57677 Query 167775 TTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGC 167834 ||||||| ||||| ||||| ||||| | || || | || || || ||||| ||||||| Sbjct 57676 TTGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGC 57617 Query 167835 TCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAA 167894 | |||||||| ||||||||||| ||||||||| | | |||| || |||| | ||| | Sbjct 57616 TGAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTA 57557 Query 167895 TCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCA 167954 | ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 57556 TTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCC 57497 Query 167955 AAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCT 168014 || ||| | | || || | |||||||||||||| |||||||| |||||||| || | Sbjct 57496 GGGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTT 57437 Query 168015 GGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTT 168074 |||| ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | | Sbjct 57436 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 57377 Query 168075 TCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATC 168134 | || || || | || | |||| ||| || |||| | ||||||| || | || | Sbjct 57376 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACC 57317 Query 168135 TTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAA 168194 | ||||| |||||||| || || |||||| | | ||||| || ||||| || ||||| | Sbjct 57316 TACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGA 57257 Query 168195 CTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAG 168254 ||||||| || ||||| || ||| | || ||||| | ||||| |||||||| | || Sbjct 57256 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 57197 Query 168255 ACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 | || || ||||||||| || ||||||| || || || | || | || |||||||| Sbjct 57196 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565050142112000