Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq33024 141 1e-28 seq100015 93.3 5e-14 seq25943 89.7 6e-13 seq985 89.7 6e-13 seq143829 87.8 2e-12 seq40144 87.8 2e-12 seq20642 84.2 2e-11 seq27191 82.4 8e-11 seq7110 82.4 8e-11 >seq33024 Length=3557 Score = 141 bits (156), Expect = 1e-28 Identities = 593/918 (65%), Gaps = 30/918 (3%) Strand=Plus/Plus Query 92786 TATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTC 92845 ||||||||||| | || || || |||||||| ||||| || ||||| ||||||| Sbjct 1012 TATTCATAACAGAAGCCTTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTTC 1071 Query 92846 CTTCCAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCAC 92903 | | |||||| ||| | | || | | | |||||| | ||| ||||| | Sbjct 1072 CCTGCAAAGAAATCAATTCCATCCAATCAAACGGATTCGAAACTCCGTAA-ACTTTCC-- 1128 Query 92904 CGATC---AACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAAT 92960 | ||| || | ||| || |||||||| |||||||| || |||||| ||| || | Sbjct 1129 CAATCCCTAAAGCACCCAACAACCTATCAGCAACAAATTCAATATACTGACTCATTAACT 1188 Query 92961 CACAATTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATT 93019 | | |||||| || | | ||| || || || ||||| | || || |||||||| Sbjct 1189 CTCCATTCATCCCAACCA-ACGCGCAAGGCAGCGCGTCACAAACAAACTCCCTCTCGATT 1247 Query 93020 ACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGG--TTTTTGTACGACAT 93077 | || || ||| | || | | || | || | | | || |||| | ||| Sbjct 1248 TCCACCGCCTCTGAAACAATCCCCTTCACGCG-CTCCTCACTCGCCTTATTGTTCAACAG 1306 Query 93078 AATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCAT 93137 ||||| || || || || || ||||| || |||||||| || |||||||| | Sbjct 1307 CGA-GTACAACAAACAGGCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGT 1365 Query 93138 TGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAA 93196 | ||| || | || || | | |||||||||||||||||||||||| | ||| || Sbjct 1366 TCGAGAAGGTAAGCCCCGGCATTAATCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAG 1424 Query 93197 CTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTT 93256 || ||||| || ||||| ||||| || || || || ||||| || || || ||| | Sbjct 1425 CTTCCAGAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTC 1484 Query 93257 GCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | | | |||||| || |||||||| || || ||| | | || | Sbjct 1485 TC---CCCGCCGTCGATCCAGCGCAAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATA 1541 Query 93317 GTTTCGATAGCGTTAAATAGGTAATC---TCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 || || | ||| |||| || | | || |||||||| ||||| || || Sbjct 1542 GTCTCAACAGCACGGAATA---AACCCGATTTTTCCTCCGAATCCTTAATGTAAGTCTCC 1598 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 | ||| | || |||||||| ||||||| ||| || || || ||||| || ||||| || Sbjct 1599 AATAATAAGGAGTACATTTCGGAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAAT 1658 Query 93434 CATCTAGCTTCCGTGATCTGCACTT-CTTGAGAAAATCTCTCTACGAGATTTTCATTGAC 93492 ||| ||||| | | || |||| ||| | ||| | ||||||| || || Sbjct 1659 GCTCTCGCTTCAGGAAGTTGAACTTCCTTCATGAAA-CGACAAGCGAGATTCTCCAGCAC 1717 Query 93493 TATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC 93552 ||||| || ||||| || || || || | | || | || ||||| ||||| Sbjct 1718 AATACCGTCAGATGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAATGACGTTCATCGGA 1777 Query 93553 TTTAAGCTTATC---CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCA 93609 | || | || ||| | || ||| || | |||||||||||| ||||||| Sbjct 1778 CGTCAGAGTGTCGGACCAGTGACGTAAATCGGAAGATAAATCGACTTCTTCAGCAGTCCA 1837 Query 93610 AAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 || || ||||| |||||||||||||| ||||| || | | ||| ||||| || || Sbjct 1838 GAAAGAAGCTTCGGCTTTTTTGTACATTTCCCAGATTTGGGGGAATTTGATTGGGAACAT 1897 Query 93670 GACAAAACGATTAGGGTT 93687 | || |||| ||||| Sbjct 1898 GCAGAATCGATCTGGGTT 1915 >seq100015 Length=1511 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| || || || ||||| ||||| || |||||||| || |||||||| || Sbjct 1218 GTACAACAAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGA 1277 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||| || | ||||| | | ||||||||||||||||||||||| | ||| || || | Sbjct 1278 GAAGGTAAGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCG-CGCAGAAGCTTC 1336 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 |||| || ||||| ||||| || || || || ||||| || || || ||| Sbjct 1337 CAGAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAA 1389 >seq25943 Length=4394 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 4189 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 4130 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||| | ||||| || Sbjct 4129 GTGGGTTCAAATCCCACTTCTGAC-ATTTATTTTT 4096 >seq985 Length=24313 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 22877 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 22818 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| ||||| ||| || || |||||| || Sbjct 22817 GTGGGTTCAAATCCCACTTCTGAC--ATTTTTCTTTCTATTTTTTTT 22773 >seq143829 Length=1159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 766 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 707 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 706 GTGGGTTCAAATCCCACTTCTGACA 682 >seq40144 Length=3047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 2662 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 2605 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||| || ||||| |||||| || ||||| |||||| Sbjct 2604 CGTGGGTTCAAATCCCACTTCTGACATTTTTTTATTTTTATTTTT 2560 >seq20642 Length=5454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 77/96 (80%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 5134 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 5077 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| |||||| || ||||| Sbjct 5076 CGTGGGTTCAAATCCCACTTCTGACATTTTTTTATT 5041 >seq27191 Length=4151 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| || | ||| Sbjct 244 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCTAACGAGGGCG 185 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 184 TGGGTTCAAATCCCACTTCTGACA 161 >seq7110 Length=44920 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 7808 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 7751 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 7750 GCGTGGGTTCAAATCCCACTTCTGACA 7724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554718834932800