Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq11074 105 6e-18 seq12130 86.0 5e-12 seq150073 82.4 6e-11 >seq11074 Length=8391 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||||| || || || ||||| | || |||||||| || ||| | ||| ||| | Sbjct 477 AAAAATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAATC 536 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 || | | | | | || ||| || || |||||||||||| | || || Sbjct 537 ATCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCTGA 596 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||||||| | ||||| | ||| || |||||| | |||||| | ||| | |||||||| Sbjct 597 TCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAGCCGATTA 656 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || ||||||||||| || ||| | || || ||||| ||||| || Sbjct 657 CAATATCCAGAAAGAATCTACTCTTCATCTTGTTTTACGTCTTCGCGGCGG 707 >seq12130 Length=7920 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || ||||| ||||| || |||| || |||| Sbjct 5977 ATGCAAATATTTGTCAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTCGAGAGCAGC 5918 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || || || ||||| || || ||||| ||||| Sbjct 5917 GACACAATTGACAATGTCAAGACTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 5858 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||||||||||| || || || || | |||||| | || | || || || ||| Sbjct 5857 CAAAGGCTTATTTTCGCTGGAAAGCAGCTCGAAGATGGTCGCACCCTCGCTGACTACAAT 5798 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || ||||| ||||||||||| | ||||| Sbjct 5797 ATCCAGAAGGAGTCAACTCTCCATTTGGTGTTGCGTCTCAGAGGTGG 5751 >seq150073 Length=1124 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| ||||| |||| || ||||| || ||| | ||| ||| | Sbjct 57 AATGCAAATTTTTGTGAAAACCTTGACTGGGAAAACTATCACCTTAGAAGTGGAGAGCTC 116 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATC 111304 ||| || | | | || || ||| || || || ||||| | ||||| | |||| Sbjct 117 TGATACTATCGATAATGTCAAGACAAAGATACAGGATAAGGAAGG-GATCCCGCCAGATC 175 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 | |||||| | || | ||| || || || ||||| ||| || |||| || |||| Sbjct 176 AGCAAAGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGCCGCACCTTGGCTGACTATA 235 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| ||||| ||||| || || || | || | ||||| || ||||| Sbjct 236 ATATTCAAAAGGAATCGACCCTCCACCTTGTCCTTCGTCTCCGTGGTGG 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421453457224000