Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq11074 114 9e-21 seq9218 104 2e-17 seq5402 89.7 4e-13 seq2675 87.8 1e-12 seq18408 84.2 2e-11 seq29279 82.4 5e-11 >seq11074 Length=8391 Score = 114 bits (126), Expect = 9e-21 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| ||||| | ||||| |||| |||||||| || ||| | ||| ||| | Sbjct 478 AAAATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAATCA 537 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTA 21947 |||| || | | | || | || || || || ||||| || | ||||| Sbjct 538 TCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCTG-- 595 Query 21948 AACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGAT 22007 | ||||| | |||||||||||||| |||||||| |||||| ||| | |||||| Sbjct 596 -ATCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAGCCGAT 654 Query 22008 TACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| ||||||||||||||| | || |||||| | || || || Sbjct 655 TACAATATCCAGAAAGAATCTACTCTTCATCTTGTTTTACGTCTTCGCGGCGG 707 >seq9218 Length=18002 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || || || || || |||||||| |||| ||| || Sbjct 15341 ATGCAGATATTTGTCAAGACTTTGACTGGAAAGACCATTACTTTGGAGGTCGAAAGTTCA 15282 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| ||||| |||||| | ||| | |||| Sbjct 15281 GACACCATTGATAATGTAAAGACTAAGATTCAGGATAAGGAGGGTATTCCTCCAGACCAG 15222 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||||||||| |||||||| || ||| ||| |||| || || || Sbjct 15221 CAAAGATTGATCTTTGCTGGAAAACAACTCGAGGATGGTCGTACTTTGGCTGACTATAAC 15162 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||||||||| |||| | ||| |||| || || Sbjct 15161 ATTCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGTCTACGCGGTGG 15115 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || |||| || ||||| |||||| ||||| ||| | | Sbjct 14885 ATGCAGATTTTCGTCAAGACTCTAACTGGGAAAACTATTACCCTGGAAGTCGAAAGCTCG 14826 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| || |||||||| || | ||| | | || Sbjct 14825 GACACCATTGACAATGTGAAGACAAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCAG 14766 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| || |||||| | ||||| || | || ||||||||| Sbjct 14765 CAGAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGGCGTACCCTAGCTGATTACAAT 14706 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| || ||||| ||| |||| Sbjct 14705 ATTCAGAAGGAGTCGACTCTCCATTTGGT 14677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| |||| || || || || || ||||| || |||| ||| | | Sbjct 15113 ATGCAGATATTTGTTAAGACTTTGACCGGGAAGACCATCACTTTGGAGGTGGAGAGCTCT 15054 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| ||||| || || | || | | || Sbjct 15053 GATACTATTGACAATGTCAAGACGAAAATTCAAGATAAGGAAGGGATTCCCCCAGATCAG 14994 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| || |||||| | ||||| || | || ||||||||| Sbjct 14993 CAGAGATTGATCTTTGCCGGGAAACAATTGGAAGACGGGCGTACCCTAGCTGATTACAAT 14934 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 ||||||||||| || ||||| ||| |||| | ||||| Sbjct 14933 ATTCAGAAGGAGTCGACTCTCCATTTGGTGCTTCGTTT 14896 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| |||||| | ||| | |||| || |||||||||||||| || ||||| ||||| Sbjct 15476 GATAAGGAGGGTATTCCTCCAGACCAGCAAAGACTTATCTTTGCAGGGAAACAGCTAGAG 15417 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 || ||| | || || || || ||||||||||| ||||||||||| |||| | Sbjct 15416 GACGGTCGTACTCTCGCTGACTATAACATTCAGAAGGAGTCTACTCTTCACTTGGTTCTT 15357 Query 22047 CGTTTACGAGGAGG 22060 ||| | || || || Sbjct 15356 CGTCTGCGTGGTGG 15343 >seq5402 Length=17369 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| |||| ||||| || ||||| | ||| || | Sbjct 5473 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACAATTACTCTCGAAGTCGAGAGTTCC 5532 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || ||| ||||| ||||| | ||| | |||| Sbjct 5533 GACACCATTGACAATGTCAAAACCAAGATTCAGGATAAGGAGGGCATTCCTCCAGACCAG 5592 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| ||||||||||| |||||||| || ||| |||| | || ||||| || Sbjct 5593 CAAAGACTGATCTTTGCTGGGAAACAACTTGAGGATGGCCGAACTCTTGCTGATTATAAC 5652 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || ||||| ||||| | || | ||||| | ||||| Sbjct 5653 ATTCAGAAAGAGTCTACCCTTCACCTTGTGCTTCGTTTGAGGGGAGG 5699 >seq2675 Length=17436 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| ||||| ||||||| ||||| ||||| || || ||| ||||| ||| | Sbjct 15348 CAAGATGCAGATATTCGTTAAAACCTTAACCGGCAAGACGATAACCATGGAAGTCGAACC 15407 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGT 21946 | || | | | | ||||| ||||| || |||||||| | ||||| Sbjct 15408 ATCTGACTCAATCAACAACATTAAGTCCAAAATCCAGGACAAAGAGGGCATCCCACCTG- 15466 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 ||||||| | || || ||||| ||||| ||||| |||||| |||| | || || Sbjct 15467 --ACCAACAACGTCTAATATTTGCCGGCAAGCAACTTGAAGATGACCGAACTGTAGCAGA 15524 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||| || ||||||||||| ||||| || Sbjct 15525 CTACAACATCCAGAAGGAATCCACTCTCCA 15554 >seq18408 Length=6019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || ||||| ||||| | ||||||||||| ||||| || || ||| ||||| ||| | Sbjct 881 AAGATGCAGATATTCGTGAAAACATTAACCGGCAAGACAATAACCATGGAAGTTGAACCA 822 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || | | | | ||||| ||||| || |||||||| | || || Sbjct 821 TCTGACTCAATCAACAACATTAAGTCCAAAATCCAGGACAAAGAGGGCATCCCACCCGAC 762 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || | ||||| ||||| ||||| ||||| |||||| | ||| | || || ||| Sbjct 761 CAGCAACGCCTTATATTTGCCGGCAAGCAACTTGAAGATGAACGAACCGTAGCAGACTAC 702 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 || || |||||||| || |||||||| Sbjct 701 AACATCCAGAAGGAGTCCACTCTTCA 676 >seq29279 Length=3900 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| |||||| | ||| | |||| ||||| || ||||| |||||||| ||||| || Sbjct 2708 GATAAGGAGGGTATTCCTCCAGACCAGCAGAGGCTGATCTTCGCTGGCAAGCAACTTGAG 2649 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| ||| | || |||||||| ||| | || |||||||||||||| Sbjct 2648 GATGGCCGAACCCTCGCTGATTACAACATTAAAAAAGAATCTACTCTTCA 2599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356781711132880