Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq18408 123 2e-23 seq60406 104 2e-17 seq279023 93.3 3e-14 seq2675 93.3 3e-14 seq35076 91.5 1e-13 seq2831 89.7 4e-13 seq278817 87.8 1e-12 seq29279 87.8 1e-12 seq9218 84.2 2e-11 seq31228 82.4 6e-11 >seq18408 Length=6019 Score = 123 bits (136), Expect = 2e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || ||||| ||| ||||||||| |||||||| ||||| | ||| Sbjct 661 AGGCGTAGCACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCTACGGTTCGT 720 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 || || || | |||||||||||||||||| ||||| ||||| || || | || |||| Sbjct 721 TCATCTTCAAGTTGCTTGCCGGCAAATATAAGGCGTTGCTGGTCGGGTGGGATGCCCTCT 780 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| ||||| ||||||| | | |||| | ||| ||| | ||| Sbjct 781 TTGTCCTGGATTTTGGACTTAATGTTGTTGATTGAGTCAGATGGTTCAACTTCCATGGTT 840 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 ||||| || ||||||| ||||||||| || || ||||| || Sbjct 841 ATTGTCTTGCCGGTTAATGTTTTCACGAATATCTGCATCTT 881 >seq60406 Length=2202 Score = 104 bits (114), Expect = 2e-17 Identities = 164/236 (69%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| ||| ||||| |||||||| || ||| ||||||||||| ||||| ||| Sbjct 1330 CCTCCCCTCAACCGAAGCACAAGATGAAGAGTCGACTCTTTCTGAATGTTATAATCAGCC 1389 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || || | ||||||||| || || ||||| | |||||| || || Sbjct 1390 AGAGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCTGGAGGA 1449 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCG--- 34077 | || ||| |||||| ||||| ||| | ||| | ||| | | ||| Sbjct 1450 ATGCCCTCCTTGTCCTGAATTT---------TGGTTTTGACATTGTCAATGGTGTCGGAA 1500 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 1501 CTCTCGACCTCCAGAGTAATTGTCTTGCCAGTTAGGGTTTTCACAAAGATTTGCAT 1556 >seq279023 Length=610 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| || ||||||| |||||| || ||||||||||||||| || || ||| Sbjct 169 CCTCCCCTCAAACGGAGCACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCAGCC 110 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || ||||| ||||| || ||||| ||||| | ||||||||| || Sbjct 109 AGGGTACGCCCATCCTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 50 Query 34021 ACGCTCTCTTTGTCCATAATTTTT 34044 | || || |||||| ||||||| Sbjct 49 ATGCCTTCCTTGTCCTGAATTTTT 26 >seq2675 Length=17436 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || ||| |||||||| |||||||| ||||| | ||| Sbjct 15569 AGGCGAAGGACGAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCTACAGTTCGG 15510 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 || || || | |||||||||||||||||| || || || || || || | || |||| Sbjct 15509 TCATCTTCAAGTTGCTTGCCGGCAAATATTAGACGTTGTTGGTCAGGTGGGATGCCCTCT 15450 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| ||||| ||||||| | | |||| | |||| ||| | ||| Sbjct 15449 TTGTCCTGGATTTTGGACTTAATGTTGTTGATTGAGTCAGATGGTTCGACTTCCATGGTT 15390 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || || || ||||||| ||||| || || || ||||| || Sbjct 15389 ATCGTCTTGCCGGTTAAGGTTTTAACGAATATCTGCATCTT 15349 >seq35076 Length=3390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || || || ||||| || ||| ||| || |||||||||||||| || Sbjct 1847 CCTCCCCTCAGACGGAGGACAAGATGGAGAGTGGACTCTTTTTGAATGTTGTAATCAGCG 1906 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | ||| |||| || | |||||||| ||||| ||||| | ||||| || || Sbjct 1907 AGTGTTCGGCCGTCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTTTGCTGGTCTGGAGGA 1966 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAA--TGGAACTC-ACACTATCAGTAGATTCG 34077 | || ||| |||||| |||||| |||| | | || | |||||| | ||| Sbjct 1967 ATGCCCTCCTTGTCCTGAATTTTGGTTTTAACATTG---TCGATTGTATCAGAACTCTCG 2023 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || || || || |||||||||||||| Sbjct 2024 ACCTCGAGAGTAATGGTCTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 2073 >seq2831 Length=23904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 || ||| || | || || || || |||||||| ||| ||||| ||||| |||||||| Sbjct 5894 GAGACCGCCACGAAGACGAAGGACAAGATGAAGAGTGGATTCCTTTTGAATATTGTAATC 5835 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||||| ||| | || ||||||||||| || ||||||||||| | ||||||||| Sbjct 5834 AGCCAAGGTACGCCCATCTTCCAATTGCTTTCCTGCAAATATCAGCCTCTGCTGATC 5778 >seq278817 Length=610 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| || ||||||| |||||| || ||||||||||||||| || || ||| Sbjct 442 CCTCCCCTCAAACGGAGCACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCAGCC 501 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||| ||||| || ||||| ||||| | ||||||||| || Sbjct 502 AGGGTACGACCATCCTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 561 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || || |||||| |||||| Sbjct 562 ATGCCTTCCTTGTCCTGAATTTT 584 >seq29279 Length=3900 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || ||||||| || || ||| ||||||||| ||||| ||||||||| Sbjct 2347 CCTCCTCTCAGACGGAGCACCAAATAGAGGGTGGACTCCTTCTGGATGTTATAATCTGCC 2406 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||| || ||||| || || | || ||||| || Sbjct 2407 AAAGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATTAGCCTTTGATGATCTGGGGGG 2466 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || |||||| ||| ||| || Sbjct 2467 ATGCCCTCTTTATCCTGAATCTT 2489 >seq9218 Length=18002 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || || || ||||||| ||| || || |||||||||||| |||||||| || Sbjct 14658 ACCACCCCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGC 14717 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| |||| |||||||| || |||||||| |||| | ||||||||| Sbjct 14718 TAGGGTACGCCCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCTCTGCTGATC 14771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || |||| || ||||||| ||| || || |||||||||||| |||||||| || Sbjct 14886 ACCACCCCTCAAACGAAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGC 14945 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| |||| |||||||| || |||||||| |||| | ||||||||| Sbjct 14946 TAGGGTACGCCCGTCTTCCAATTGTTTCCCGGCAAAGATCAATCTCTGCTGATC 14999 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 || ||| || | || || || || ||||| || || ||||||||||| |||||||| Sbjct 14427 GAGACCACCACGAAGACGGAGGACAAGATGGAGGGTTGATTCCTTCTGAATATTGTAATC 14486 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 ||||| ||| | || ||||| ||||| || ||||| |||| | ||||||||| Sbjct 14487 AGCCAAAGTGCGCCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTGG 14546 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-T 34075 || | || |||||||||| || || ||| | | | | |||||| || | | Sbjct 14547 GGGAATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTATCAATAGTATCAG-AGCTCT 14605 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||| | || || || || || |||| ||| || ||||| || ||||| Sbjct 14606 CGACTTCCAAGGTGATCGTCTTCCCCGTTAATGTCTTGACAAATATCTGCAT 14657 >seq31228 Length=3734 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || ||||||| |||||||| ||||||||| ||||| || || ||| Sbjct 3093 CCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTAGACTCCTTCTGGATGTTATAGTCGGCC 3152 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || |||| |||| ||||| |||||||| |||| | ||||| || Sbjct 3153 AAAGTACGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAACCTTTGCTGGTC 3205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395573281991440