Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5880 91.5 2e-13 seq407 91.5 2e-13 >seq5880 Length=12336 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/287 (67%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| || ||||| | || || || ||||| || ||| | ||| || || Sbjct 7760 CGGTCAAATCGTCCTGGCCTCAGCAGAGCAGAATCAAGAATGTCAGCTCTGTTAGTAGCA 7819 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || || |||| |||||| || | ||||| ||||||||||| || | || ||||| Sbjct 7820 GCAATTACAATGATGCCGGTATTACCCTCAAAACCATCCATCTCCGTGAGAAGCTGATTC 7879 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCG 10963 | || ||||| | |||||||||| | |||| || | || | ||| | || Sbjct 7880 AACGTCTGTTCCCTTTCATCATTCCC---TCCACCAATTCCAGTACCTCTCTGCCTCCCC 7936 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023 || || || |||||||| | ||||| ||||| || |||||| || || ||| Sbjct 7937 ACTGCATCTATTTCATCAACAAAAACAATACATGGAGCATTTTCTTTTGCCTTTTTAAAT 7996 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 | ||| || |||| ||||| ||||| |||||||| || ||||| Sbjct 7997 AGATCACGCACTCGAGATGCACCCACACCAACAAACATCTCTACAAA 8043 >seq407 Length=47313 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/287 (67%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| || ||||| | || || || ||||| || ||| | ||| || || Sbjct 36713 CGGTCAAAACGTCCTGGCCTCAGAAGAGCTGAATCAAGAATGTCAGCTCTGTTAGTTGCA 36654 Query 10847 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 10903 || || || | | ||| || |||| |||||||||||||||||||| | || ||| Sbjct 36653 GCAATTACTATTACGCCAGT---GTTACCCTCAAAGCCATCCATCTCAGTGAGAAGCTGA 36597 Query 10904 TTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCG 10963 || | |||||||| | |||||||||| | | | || | || | ||| | || Sbjct 36596 TTAAGTGTTTGTTCCCTTTCATCATTCCCTCCCCCAATTCCAGTACCTCTTTGTCTCCCA 36537 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023 || || ||||||||||| | ||||| || || || |||||| || || |||| Sbjct 36536 ACAGCATCAATTTCATCAACAAAAACAATGCATGGAGCATTTTCTTTCGCCTTTTTAAAG 36477 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 | ||| || |||| ||||| || || |||||||| || || || Sbjct 36476 AGATCACGCACTCGAGAAGCACCCACGCCAACAAACATCTCAACGAA 36430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595055879377600