Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq112514 125 5e-24 seq51823 105 5e-18 seq35076 102 6e-17 seq110967 100 2e-16 seq8115 98.7 7e-16 seq12130 96.9 2e-15 seq5402 96.9 2e-15 seq29279 93.3 3e-14 seq3774 93.3 3e-14 seq18381 89.7 4e-13 seq20614 82.4 5e-11 >seq112514 Length=1387 Score = 125 bits (138), Expect = 5e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 ||||||| |||||||| ||| || | | | ||||| || || || || ||| | | Sbjct 423 CTTTTTGAATGTTGTAGTCGGCAAGCGTACGACCATCTTCCAACTGCTTACCGGCGAAAA 482 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 ||||||| |||||||| ||||| ||||| || || ||| || |||| ||| | | Sbjct 483 TCAAACGTTGTTGGTCCGGAGGAATACCTTCTTTATCTTGAATCTTAGTTTTGACATTAT 542 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 |||||||||| ||| ||| || |||||||||||||||||||| || | ||||| || | Sbjct 543 CTATAGTATCACTAGATTCAACTTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTCACGA 602 Query 15167 AAATTTGCATATTT 15180 | || ||||| ||| Sbjct 603 ATATCTGCATTTTT 616 >seq51823 Length=2487 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| || || || || ||||| |||||||| ||| || | | | |||| Sbjct 1784 AACACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGCCCGTCC 1725 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || ||||| | ||||| | ||| ||||| ||||||||||||||||| Sbjct 1724 TCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC 1665 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| | || ||| | || || |||||| | | || || || | ||| || || Sbjct 1664 TGGATTTTGGTCTTGACATTGTCAATGGTATCGGAACTCTCAACCTCGAGGGTGATAGTC 1605 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || || ||||| ||||||||| Sbjct 1604 TTGCCGGTCAAGGTCTTGACAAAGATTTGCATA 1572 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || || || || ||||| || | | | | | | || || || ||| Sbjct 2003 TGGAGGGTAGATTCCTTCTGAATATTGTAGTCAGCCAAAGTGCGCCCATCCTCCAACTGT 1944 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | ||||| | ||| || || ||| |||||||||||||| ||| || Sbjct 1943 TTCCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTA 1884 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| | || || || ||||| | || || || ||||| ||||| || || ||| Sbjct 1883 GTCTTCACATTGTCAATTGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCAGTC 1824 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || || || || ||||| Sbjct 1823 AATGTCTTGACGAAGATCTGCAT 1801 >seq35076 Length=3390 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || |||||||| ||||||||||| ||| ||| |||| || | || Sbjct 1870 ATGGAGAGTGGACTCTTTTTGAATGTTGTAATCAGCGAGTGTTCGGCCGTCCTCAAGCTG 1929 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| || | |||| | || ||||| ||||| || |||||||| |||||| Sbjct 1930 CTTGCCTGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATTTT 1989 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | |||| ||| | || || ||||| | | || || || | |||||||| || ||||| Sbjct 1990 GGTTTTAACATTGTCGATTGTATCAGAACTCTCGACCTCGAGAGTAATGGTCTTGCCTGT 2049 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| |||||||| Sbjct 2050 AAGGGTCTTGACAAAGATTTGCAT 2073 >seq110967 Length=1286 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | || || |||| ||||| || || || || || |||||||| || ||| Sbjct 652 CCACCACGAAGTCGTAGGACTAGGTGAAGTGTTGACTCCTTCTGGATGTTGTACTCTGCT 711 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | || | ||||| | || || || || |||||| || |||||||| ||| Sbjct 712 AAGG-TCCTACCATCTTCAAGCTGCTTTCCTGCAAATATCAGTCGTTGTTGGTCTGGTGG 770 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||||| || || |||| ||| | || || ||||| |||||| Sbjct 771 TATTCCTTCCTTGTCTTGGATCTTCGTTTTCACATTATCGATCGTATCTGAGGATTCTAC 830 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| ||| || || || ||||| || ||||| || || || ||||| ||| Sbjct 831 CTCTAGGGTTATCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTTT 882 >seq8115 Length=10241 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | ||||||| | ||| Sbjct 7292 ATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCTTCGAGTTG 7351 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | || | |||||||||||| ||| |||||||| ||||| || || Sbjct 7352 TTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTT 7411 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | |||| ||| | || || || || ||| || || | ||| || ||||| || || Sbjct 7412 GGTTTTGACATTGTCGATTGTGTCTGAGGATTCAACCTCAAGGGTGATTGTTTTCCCAGT 7471 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 7472 TAGGGTTTTCACGAAGATCTGCATTTTTG 7500 >seq12130 Length=7920 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || || || || |||||||| | | | | | | || || || ||| Sbjct 5319 TGGAGGGTAGATTCCTTCTGAATATTGTAATCCGCCAAAGTGCGCCCATCCTCCAACTGT 5378 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | ||| || || ||| ||||||||||| || || || Sbjct 5379 TTCCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATCTTC 5438 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| | || ||||| ||||| | || || |||||||| ||||| || || ||| Sbjct 5439 GTCTTGACATTATCGATAGTGTCGCTGCTCTCCACCTCTAAGGTGATGGTCTTGCCAGTC 5498 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| Sbjct 5499 AATGTCTTGACAAAGATCTGCAT 5521 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || || |||||||| || || || || ||||| || Sbjct 965 CCACCACGCAGACGGAGAACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCTGCA 1024 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | || ||||||||| | || | | ||| ||||| ||| Sbjct 1025 AGGGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAAATAAGTCTCTGCTGGTCTGGGGGA 1084 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||| || ||| || | || ||| | || || || ||||| | || || Sbjct 1085 ATTCCCTCCTTATCTTGAATCTTAGTCTTGACATTGTCAATTGTGTCGCTGCTCTCGACC 1144 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || || || || || || ||||||||||| Sbjct 1145 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 1191 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| || || || || || || ||||||||||| ||| | | | |||| Sbjct 752 AACACCAGATGGAGTGTCGACTCCTTCTGGATGTTGTAATCAGCGAGGGTGCGCCCGTCC 811 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || ||||| | ||||| | ||| ||||| |||||||| |||||||| Sbjct 812 TCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 871 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| | || || | || || ||||| | | || || || | ||| ||||| Sbjct 872 TGGATTTTGGTCTTAACGTTGTCAATGGTATCAGAACTCTCGACCTCAAGGGTGATGGTC 931 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || || || ||||| |||||| Sbjct 932 TTTCCGGTCAACGTCTTGACGAAAATCTGCATA 964 >seq5402 Length=17369 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| ||||| || ||||| ||||| ||| ||| | || || | |||| Sbjct 5675 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCAAGAGTTCGGCCATCCTCAAGTTGT 5616 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | || ||||| ||||| || ||||| || ||| ||| Sbjct 5615 TTCCCAGCAAAGATCAGTCTTTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGAATCTTG 5556 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||| ||| | || || || ||| | | || || || | ||||| || || || || Sbjct 5555 GTTTTGACATTGTCAATGGTGTCGGAACTCTCGACTTCGAGAGTAATTGTCTTGCCAGTT 5496 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| |||||||| Sbjct 5495 AGGGTTTTCACAAAGATTTGCAT 5473 >seq29279 Length=3900 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | ||| | | || | ||||| ||||| ||||||| ||||||||||| Sbjct 2573 TGCCACCCCTCAAACGAAGCACAAGGTGAAGAGTAGATTCTTTTTTAATGTTGTAATCAG 2632 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| | || || | ||| ||||||||| | |||| | ||| ||||| | Sbjct 2633 CGAGGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGAG 2692 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || ||||| || |||| ||| |||| ||| | | || || ||| | | || | Sbjct 2693 GAATACCCTCCTTATCCTAAATCTTGGTTTTGACATTGTGAATGGTGTCGGAACTCTCGA 2752 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || || || | | || || ||||| ||||| |||||||| Sbjct 2753 CCTCGAGAGTTATTGTCTAGTCAGTAAGGGTTTTCACAAAGATTTGCAT 2801 >seq3774 Length=25925 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||||||| |||||||| || || || ||||||||||| || | | | || || Sbjct 8118 ACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACCATCCTCG 8059 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | |||| | || ||||| || |||| ||||||||| | Sbjct 8058 AGTTGCTTTCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCATTCCTTGTCCTGA 7999 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| |||| ||| | || || || || | | || || || | || || ||||| Sbjct 7998 ATTTTGGTTTTGACATTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATAGTTTTG 7939 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 7938 CCAGTAAGAGTCTTGACAAAGATTTGCAT 7910 >seq18381 Length=6025 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| ||||| || || ||||| || |||||||| || ||| | || || Sbjct 2092 ACCAAATGGAGGGTGGACTCCTTTTGAATATTGTAATCAGCAAGGGTTCGGCCATCCTCA 2151 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | |||| | || ||||| ||||| ||||||||||| | Sbjct 2152 AGTTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGA 2211 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| |||| ||| | || || || ||| | | || || || | |||||||| || Sbjct 2212 ATCTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCGAGAGTAATGGTCTTG 2271 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || |||||||| Sbjct 2272 CCAGTTAGGGTCTTGACGAAGATTTGCAT 2300 >seq20614 Length=5371 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || ||||| || ||||| ||| | | | | | | || || || || Sbjct 2521 TGGAGGGTCGATTCCTTTTGGATATTGTAGTCGGCCAAAGTGCGCCCATCCTCCAACTGC 2462 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | ||||| | ||| || || ||| || ||||||||||| || || Sbjct 2461 TTCCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTA 2402 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||| ||| | || || || || | | || || |||| |||||||| || || || Sbjct 2401 GTTTTGACATTGTCAATGGTGTCTGAACTCTCGACCTCTAGAGTAATGGTCTTGCCAGTA 2342 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| |||||||| Sbjct 2341 AGAGTCTTGACAAAGATTTGCAT 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356051659380200