Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1 693 0.0 >seq1 Length=146306 Score = 693 bits (768), Expect = 0.0 Identities = 751/993 (76%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||||||| | ||| ||||||||||| ||||||||||| || ||||| |||||||| Sbjct 88858 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 88799 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 ||||| ||||||||| | | || ||||| || || | ||||||||||||| |||| Sbjct 88798 CCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 88739 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | || |||||||| |||||||| || | |||||| ||||| ||||||| ||| | | Sbjct 88738 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAA 88679 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 ||||| ||||| || || || || ||||| || || | ||||||||| | ||||| || Sbjct 88678 GCAGTAAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 88619 Query 7769 TTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG 7828 || ||||| ||| ||||||||||| | |||||||| || || |||||||| ||||| Sbjct 88618 TTATTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATA 88559 Query 7829 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTG 7888 || || || ||||| ||||||||||| | ||||| | || || ||| || ||| Sbjct 88558 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 88499 Query 7889 GTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCA 7948 ||||| | | || | ||| ||||| | ||||||||||| ||||| || || || || Sbjct 88498 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCG 88439 Query 7949 CCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 8008 || || |||||||| || |||| |||||| || |||||||| |||||||||||||| || Sbjct 88438 CCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 88379 Query 8009 TGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAA 8068 ||||| |||| |||| ||||||| |||||||| || || ||||||||| | ||||| ||| Sbjct 88378 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 88319 Query 8069 GAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAG 8128 |||||||||| || |||| | ||| || |||| || || ||||| ||||| || Sbjct 88318 CTTCCTTGACCGATTGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGAA 88259 Query 8129 TATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCC 8188 ||||| ||| ||||| ||||||||||| |||||| || ||||||||||||||||||| Sbjct 88258 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 88199 Query 8189 ATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTG 8248 || || | | ||| | | |||||| | | || || | |||||||||| ||| Sbjct 88198 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTG 88139 Query 8249 TAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCG 8308 || | ||||||||||| ||| ||||||||||| || ||||| ||||| | || ||||| Sbjct 88138 TATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCT 88079 Query 8309 TTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCG 8368 ||||| ||||| || |||||||| || || ||||| || || | || || |||| Sbjct 88078 GCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 88019 Query 8369 ACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA- 8427 || |||||||| || || ||||| || || ||||||||||| | ||| || | || || Sbjct 88018 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAAT 87959 Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487 ||| | || |||| | | ||||| ||||||| ||||| ||||| |||| || || Sbjct 87958 ACAGA-AGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAG 87900 Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || || | |||| ||||| |||||||||||| Sbjct 87899 GCGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 87867 Score = 574 bits (636), Expect = 6e-159 Identities = 740/1016 (73%), Gaps = 4/1016 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || | || || ||||| |||| || ||||||||| || ||||| Sbjct 57139 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 57198 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || ||||| ||||| ||| Sbjct 57199 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTC 57258 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| || ||||| | ||| || || ||||| |||||||| || | ||| Sbjct 57259 TCAAATTCAGGATCTTCGGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 57318 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | || ||||| | | |||| | |||| | ||| | || || ||||| Sbjct 57319 TTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 57378 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 57379 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 57438 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 ||||| ||||| |||||||| ||||| || ||||| |||| || || | ||| ||| | Sbjct 57439 AAACGGTTAGCGGTGACCATTGAATAAGTTTCCTCAGCTTGGGTTGGGTTAAAAGCCCGG 57498 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| ||||| |||||||| |||||| Sbjct 57499 AATGTATTTGCCCCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATA 57558 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 ||||| |||| || | || || | ||| || || |||||||||||||| ||||| ||| Sbjct 57559 GCACATAGCAGAGCGGCGCCCAATACACCAGCAACCCCCATCATATGAAAAGGGTTCAGC 57618 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| |||||||| ||||| |||||||| Sbjct 57619 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGGAATATGGCTGCTACACCAAAA 57678 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 57679 CTAGGCGCAAAGAACCAACCAGACTGGCCTAGTGGATAAATTAGGAATACAGAAACAAAA 57738 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 |||||||| || ||||| || ||||||||||| || || || | | || ||| || || Sbjct 57739 ACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGGCGCA-ATTGAACAGATCGAGC 57797 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | || || || || | ||| |||||||| || | || || || || || || ||||| Sbjct 57798 AAGTTCGAATTGGCGTAACATAAAACCTATTAGTCCGAAAGCGCCATGAAGAGCAACAAA 57857 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || |||||||| || ||||| |||||||| Sbjct 57858 AGTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 57917 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || | | | || ||| | | | | ||||||||| || || || || || | ||| Sbjct 57918 CAGCAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACGGCTGCGGTTAAGAA 57977 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| || | ||| || || ||||| ||| || || || Sbjct 57978 ATTGCAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGACGTTACAAACGT 58037 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 || ||||| | |||||| || | || | |||||| ||| || || | ||||| || Sbjct 58038 CGTACCCGTAAACCAACCCCCTACAGCGAAATAAGCACAAGGAAAGAGCAATAGACCAGA 58097 Query 7222 CCAACCAACAAAAACGAACCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAAC 7276 |||||| ||||||||||| | || | | ||| ||||||||| | | ||||||| Sbjct 58098 CCAACCTACAAAAACGAAACGGTCTCTACGTAA-CCAGTCATCCATAATATCAAAC 58152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619731796956800