Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq407 96.9 4e-15
seq5880 95.1 1e-14
seq2381 89.7 6e-13
seq80314 87.8 2e-12
seq6823 84.2 3e-11
seq100015 82.4 9e-11
>seq407
Length=47313
Score = 96.9 bits (106), Expect = 4e-15
Identities = 245/369 (66%), Gaps = 8/369 (2%)
Strand=Plus/Minus
Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761
|| ||||| || ||||| | || || || ||||| || ||| | ||| || ||
Sbjct 36713 CGGTCAAAACGTCCTGGCCTCAGAAGAGCTGAATCAAGAATGTCAGCTCTGTTAGTTGCA 36654
Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818
|| || || | | ||| || |||| || ||||||||||||||||| | || |||
Sbjct 36653 GCAATTACTATTACGCCAGT---GTTACCCTCAAAGCCATCCATCTCAGTGAGAAGCTGA 36597
Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCG 12878
|| | |||||||| | |||||||||| | | | || | || | ||| | ||
Sbjct 36596 TTAAGTGTTTGTTCCCTTTCATCATTCCCTCCCCCAATTCCAGTACCTCTTTGTCTCCCA 36537
Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938
|| || |||||||| |||| ||||| || || || |||||| || || ||||
Sbjct 36536 ACAGCATCAATTTCATCAACAAAAACAATGCATGGAGCATTTTCTTTCGCCTTTTTAAAG 36477
Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998
| ||| ||||||| ||||| || || ||||||||||| || || | | | |||
Sbjct 36476 AGATCACGCACTCGAGAAGCACCCACGCCAACAAACATCTCAACGAATTCTGAACCCGAA 36417
Query 12999 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 13057
|| | || || || || | ||| || || || || || || |||||||| ||
Sbjct 36416 -ATGGAGAAAAATGGCACACCTGCTTCCCCTGCAATAGCCTTTGCCAGCAGGGTCTTTCC 36358
Query 13058 CGTCCCTGG 13066
||||||||
Sbjct 36357 TGTCCCTGG 36349
>seq5880
Length=12336
Score = 95.1 bits (104), Expect = 1e-14
Identities = 194/287 (68%), Gaps = 6/287 (2%)
Strand=Plus/Plus
Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761
|| ||||| || ||||| | || || || ||||| || ||| | ||| || ||
Sbjct 7760 CGGTCAAATCGTCCTGGCCTCAGCAGAGCAGAATCAAGAATGTCAGCTCTGTTAGTAGCA 7819
Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821
|| || |||| |||||| || | || || ||||||||||| || | || |||||
Sbjct 7820 GCAATTACAATGATGCCGGTATTACCCTCAAAACCATCCATCTCCGTGAGAAGCTGATTC 7879
Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCG 12878
| || ||||| | |||||||||| | |||| || | || | ||| | ||
Sbjct 7880 AACGTCTGTTCCCTTTCATCATTCCC---TCCACCAATTCCAGTACCTCTCTGCCTCCCC 7936
Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938
|| || || ||||| |||| ||||| ||||| || |||||| || || |||
Sbjct 7937 ACTGCATCTATTTCATCAACAAAAACAATACATGGAGCATTTTCTTTTGCCTTTTTAAAT 7996
Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985
| ||| ||||||| ||||| ||||| ||||||||||| |||||
Sbjct 7997 AGATCACGCACTCGAGATGCACCCACACCAACAAACATCTCTACAAA 8043
>seq2381
Length=21385
Score = 89.7 bits (98), Expect = 6e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
|| || || ||||| || || || | || || |||||| || || ||||| | |||
Sbjct 13988 TGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGCATTAAACCA 14047
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
||||| |||| |||||| || || || || ||||||||||| ||||| || |||||
Sbjct 14048 CGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAA 14107
Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGA 127680
|| || |||| || ||||| ||||| ||
Sbjct 14108 GCAAATGCAATTATTCGCTCTGCAAACGA 14136
>seq80314
Length=1716
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
|| || || ||||| || || || | ||||| |||||| || || ||||| | |||
Sbjct 955 TGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCAGGCATTAAACCT 896
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
||||| |||| |||||| || ||||| || ||||||||||| | || || |||||
Sbjct 895 CGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAGAAGAATACTCCTTCAACACAA 836
Query 127652 GCGAACGCAAATAGACGCTCGGCAAA 127677
|| || |||| || ||||| |||||
Sbjct 835 GCAAATGCAATTATTCGCTCTGCAAA 810
>seq6823
Length=41093
Score = 84.2 bits (92), Expect = 3e-11
Identities = 164/239 (69%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 117127 CTCGACAT--TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 117184
|| ||||| ||| |||||||| || ||||||||||||||||| |||| || || | |
Sbjct 37503 CTAGACATACTTGAGGCCTTGGCGTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAA 37562
Query 117185 ACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGA 117243
|| |||| || ||||| | || ||| || | | | || || || ||| |||
Sbjct 37563 AC-CACCTCTGAGACATATAATGGTAAGTTGAAATGGCTGAATCAACATCCTCCTTGTGG 37621
Query 117244 ATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 117303
|| || | || || | ||| | ||||| ||| ||| | |||| | | |||| || |
Sbjct 37622 ATGCCTACTGCAACTCTCATTATCATGTGTTGTGGTCTCTCCACAACCTTCCCATTGACC 37681
Query 117304 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362
|| ||||| | |||| | ||| |||| ||||||||| || ||||| | |||||
Sbjct 37682 TTCAACAGGTATGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAATCCCT 37740
>seq100015
Length=1511
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|||||||| || || || | || ||||||||| || |||||||| | || || |||
Sbjct 1249 CCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCATTAACCCTCGTTTC 1308
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | ||| || ||||| || || ||||||||||| ||||| || ||||| |||||
Sbjct 1309 TTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAAGCGAAA 1368
Query 127658 GCAAATAGACGCTCGGCAAA 127677
|| | | ||||| || ||
Sbjct 1369 GCGACAATTCGCTCAGCGAA 1388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611147344555200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |