Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq407 96.9 4e-15 seq5880 95.1 1e-14 seq2381 89.7 6e-13 seq80314 87.8 2e-12 seq6823 84.2 3e-11 seq100015 82.4 9e-11 >seq407 Length=47313 Score = 96.9 bits (106), Expect = 4e-15 Identities = 245/369 (66%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || ||||| | || || || ||||| || ||| | ||| || || Sbjct 36713 CGGTCAAAACGTCCTGGCCTCAGAAGAGCTGAATCAAGAATGTCAGCTCTGTTAGTTGCA 36654 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 || || || | | ||| || |||| || ||||||||||||||||| | || ||| Sbjct 36653 GCAATTACTATTACGCCAGT---GTTACCCTCAAAGCCATCCATCTCAGTGAGAAGCTGA 36597 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCG 12878 || | |||||||| | |||||||||| | | | || | || | ||| | || Sbjct 36596 TTAAGTGTTTGTTCCCTTTCATCATTCCCTCCCCCAATTCCAGTACCTCTTTGTCTCCCA 36537 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938 || || |||||||| |||| ||||| || || || |||||| || || |||| Sbjct 36536 ACAGCATCAATTTCATCAACAAAAACAATGCATGGAGCATTTTCTTTCGCCTTTTTAAAG 36477 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 | ||| ||||||| ||||| || || ||||||||||| || || | | | ||| Sbjct 36476 AGATCACGCACTCGAGAAGCACCCACGCCAACAAACATCTCAACGAATTCTGAACCCGAA 36417 Query 12999 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 13057 || | || || || || | ||| || || || || || || |||||||| || Sbjct 36416 -ATGGAGAAAAATGGCACACCTGCTTCCCCTGCAATAGCCTTTGCCAGCAGGGTCTTTCC 36358 Query 13058 CGTCCCTGG 13066 |||||||| Sbjct 36357 TGTCCCTGG 36349 >seq5880 Length=12336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 194/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || ||||| | || || || ||||| || ||| | ||| || || Sbjct 7760 CGGTCAAATCGTCCTGGCCTCAGCAGAGCAGAATCAAGAATGTCAGCTCTGTTAGTAGCA 7819 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || || |||| |||||| || | || || ||||||||||| || | || ||||| Sbjct 7820 GCAATTACAATGATGCCGGTATTACCCTCAAAACCATCCATCTCCGTGAGAAGCTGATTC 7879 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCG 12878 | || ||||| | |||||||||| | |||| || | || | ||| | || Sbjct 7880 AACGTCTGTTCCCTTTCATCATTCCC---TCCACCAATTCCAGTACCTCTCTGCCTCCCC 7936 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938 || || || ||||| |||| ||||| ||||| || |||||| || || ||| Sbjct 7937 ACTGCATCTATTTCATCAACAAAAACAATACATGGAGCATTTTCTTTTGCCTTTTTAAAT 7996 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | ||| ||||||| ||||| ||||| ||||||||||| ||||| Sbjct 7997 AGATCACGCACTCGAGATGCACCCACACCAACAAACATCTCTACAAA 8043 >seq2381 Length=21385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || ||||| || || || | || || |||||| || || ||||| | ||| Sbjct 13988 TGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGCATTAAACCA 14047 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 ||||| |||| |||||| || || || || ||||||||||| ||||| || ||||| Sbjct 14048 CGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAA 14107 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || |||| || ||||| ||||| || Sbjct 14108 GCAAATGCAATTATTCGCTCTGCAAACGA 14136 >seq80314 Length=1716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || ||||| || || || | ||||| |||||| || || ||||| | ||| Sbjct 955 TGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCAGGCATTAAACCT 896 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 ||||| |||| |||||| || ||||| || ||||||||||| | || || ||||| Sbjct 895 CGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAGAAGAATACTCCTTCAACACAA 836 Query 127652 GCGAACGCAAATAGACGCTCGGCAAA 127677 || || |||| || ||||| ||||| Sbjct 835 GCAAATGCAATTATTCGCTCTGCAAA 810 >seq6823 Length=41093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 117127 CTCGACAT--TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 117184 || ||||| ||| |||||||| || ||||||||||||||||| |||| || || | | Sbjct 37503 CTAGACATACTTGAGGCCTTGGCGTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAA 37562 Query 117185 ACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGA 117243 || |||| || ||||| | || ||| || | | | || || || ||| ||| Sbjct 37563 AC-CACCTCTGAGACATATAATGGTAAGTTGAAATGGCTGAATCAACATCCTCCTTGTGG 37621 Query 117244 ATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 117303 || || | || || | ||| | ||||| ||| ||| | |||| | | |||| || | Sbjct 37622 ATGCCTACTGCAACTCTCATTATCATGTGTTGTGGTCTCTCCACAACCTTCCCATTGACC 37681 Query 117304 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 || ||||| | |||| | ||| |||| ||||||||| || ||||| | ||||| Sbjct 37682 TTCAACAGGTATGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAATCCCT 37740 >seq100015 Length=1511 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || || || | || ||||||||| || |||||||| | || || ||| Sbjct 1249 CCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCATTAACCCTCGTTTC 1308 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||| || ||||| || || ||||||||||| ||||| || ||||| ||||| Sbjct 1309 TTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAAGCGAAA 1368 Query 127658 GCAAATAGACGCTCGGCAAA 127677 || | | ||||| || || Sbjct 1369 GCGACAATTCGCTCAGCGAA 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611147344555200