Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq11074 104 2e-17 seq9871 102 6e-17 seq9218 102 6e-17 seq2831 95.1 8e-15 seq51823 93.3 3e-14 seq10696 93.3 3e-14 seq59535 91.5 1e-13 seq18381 87.8 1e-12 seq12130 87.8 1e-12 >seq11074 Length=8391 Score = 104 bits (114), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 39485 AATCATCG--CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATT 39542 |||||| | ||||| || | ||| | || | ||| | ||| |||||| || ||||| Sbjct 717 AATCATAGTACCGCCGCGAAGACGTAAAACAAGATGAAGAGTAGATTCTTTCTGGATATT 658 Query 39543 ATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTG 39602 |||||||| ||| || |||| || | |||||| || |||| || | ||| || || Sbjct 657 GTAATCGGCTAAAGTACGACCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGTTGTTG 598 Query 39603 ATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCT 39660 ||| | || | |||||||||||| | || || || | || |||| | ||||||| Sbjct 597 ATCAGGTGGGATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCG--ATTGTGTCT 540 Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||| || || | || |||||||| || |||| ||||| ||||| |||||||| Sbjct 539 GATGATTCAACTTCTAGGGTTATTGTTTTGCCAGTTAGGGTTTTCACGAATATCTGCAT 481 >seq9871 Length=9033 Score = 102 bits (112), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||||||||| |||||| ||| |||| ||||| |||||||| |||| Sbjct 272 TTCCTTCTGAATATTATAATCAGCCAAAGTGCGCCCATCCTCCAACTGTTTCCCAGCAAA 331 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATC 39645 || || | ||||||||||| || | ||||| ||||| | || || | | || Sbjct 332 GATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTCACATT 391 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 || | | ||||| ||| ||||| ||||| || || || || || || || || || Sbjct 392 GT--CAATCGTGTCGCTGCTCTCCACCTCCAAGGTGATAGTCTTCCCAGTCAATGTCTTG 449 Query 39706 ACGAAGATCTGCAT 39719 |||||||||||||| Sbjct 450 ACGAAGATCTGCAT 463 >seq9218 Length=18002 Score = 102 bits (112), Expect = 6e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | |||||| || |||||||| | ||| || || || ||||| ||||| || Sbjct 14887 CCACCCCTCAAACGAAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGCT 14946 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || ||||||||||||||| |||| || || | ||||||||| | ||| Sbjct 14947 AGGGTACGCCCGTCTTCCAATTGTTTCCCGGCAAAGATCAATCTCTGCTGATCTGGGGGA 15006 Query 39613 ACGCCTTCTTTGTCGCATATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| || || ||||| | || | || ||| || || || | ||| |||| Sbjct 15007 ATCCCTTCCTTATCTTGAATTTTCGTCTTGACATTGTCAATA--GTATCAGAGCTCTCCA 15064 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || || || ||||| || || || |||||||| Sbjct 15065 CCTCCAAAGTGATGGTCTTCCCGGTCAAAGTCTTAACAAATATCTGCAT 15113 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || |||||||| | ||| || || || ||||| ||||| || | || | Sbjct 14670 ACGGAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGCTAGGGTACGCCC 14729 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 || ||||||||||| ||| |||| || || | ||||||||| | || | |||||||| Sbjct 14730 GTCTTCCAATTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATCCCTTCTTT 14789 Query 39624 GTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTA 39681 || | || ||| | | || || | | ||||| | |||||| || |||| ||| Sbjct 14790 ATCCTGGATCTTTGTCTTCACATTGT--CAATGGTGTCCGAGCTTTCGACTTCCAGGGTA 14847 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || |||| ||| || ||||| |||||||| Sbjct 14848 ATAGTTTTCCCAGTTAGAGTCTTGACGAAAATCTGCAT 14885 >seq2831 Length=23904 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| || || | ||| | |||| ||| ||||| ||||| ||||| ||| Sbjct 5890 CCGCCACGAAGACGAAGGACAAGATGAAGAGTGGATTCCTTTTGAATATTGTAATCAGCC 5831 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| |||||||| || || |||| || | | ||||||||| | || Sbjct 5830 AAGGTACGCCCATCTTCCAATTGCTTTCCTGCAAATATCAGCCTCTGCTGATCTGGAGGA 5771 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||| || || | | | | ||||| | ||| ||||| Sbjct 5770 ATACCTTCCTTGTCTTGTATCTTCGTCTTCACATTATCAATGGTGTCGGAGCTCTCCACC 5711 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || || || || || ||||||||||| Sbjct 5710 TCCAAGGTGATGGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 5664 >seq51823 Length=2487 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||| || || |||||| ||| |||| ||||| |||||||| |||| Sbjct 1992 TTCCTTCTGAATATTGTAGTCAGCCAAAGTGCGCCCATCCTCCAACTGTTTCCCTGCAAA 1933 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || || | ||||||||| | || | ||||| ||||| | | | || || | | | Sbjct 1932 GATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTC-CTGAATCTTAGTCTTCACAT 1874 Query 39648 CG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | | | |||||| ||| ||||| ||||| || || || || || || || || || | Sbjct 1873 TGTCAATTGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTGA 1814 Query 39707 CGAAGATCTGCAT 39719 ||||||||||||| Sbjct 1813 CGAAGATCTGCAT 1801 >seq10696 Length=13777 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | || || || | ||| | |||| || || || || || |||||| || Sbjct 6317 CCGCCACGAAGGCGAAGAACAAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCGCCC 6376 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || | ||||| || | || |||| || || ||||| || || Sbjct 6377 AGAGTGCGGCCATCTTCAAGCTGTTTTCCTGCGAAGATTAGGCGTTGTTGATCAGATGGG 6436 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| ||||||||| ||||| ||| | || | | |||||||| |||||| Sbjct 6437 ATGCCCTCTTTGTCGTGGATTTTGGATTTGAGGGTGTCGATTGTGTCTGATGATTCCACT 6496 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 || | || |||||||| || |||| |||| | |||||||||||||| Sbjct 6497 TCAAGGGTGATTGTTTTTCCGGTTAGGTTTTTCATGAAGATCTGCATGT 6545 >seq59535 Length=2228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 |||| || || | ||| || || | ||| | |||| ||| || || || || || |||| Sbjct 1523 CGCCACCGCGAAGACGGAGGACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGG 1582 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | || |||| || | |||||| ||| | || |||| ||| || || || | | Sbjct 1583 CGAGGGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATTAGACGTTGTTGGTCTGGTG 1642 Query 39611 GTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 | | ||||||||||| | || || || | || |||| | |||||| | | ||| Sbjct 1643 GGATTCCTTCTTTGTCTTGGATTTTGGTTTTGACATTGTCG--ATTGTGTCGGAGGATTC 1700 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || |||||||| || |||| |||||||||||||||||||| Sbjct 1701 AACCTCGAGGGTGATTGTTTTGCCGGTTAGGGTTTTTACGAAGATCTGCAT 1751 >seq18381 Length=6025 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| ||||| ||||| ||||| ||| |||| ||||| || ||||| |||| Sbjct 1881 TTCCTTTTGGATATTGTAATCAGCCAAGGTGCGGCCATCCTCCAACTGCTTCCCTGCAAA 1940 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTT-TGTTTA-ATC 39645 || || | |||||||| | || | ||||| ||||| ||| ||| | || | || Sbjct 1941 GATCAACCTTTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGTCTTGACATT 2000 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 || || || || | ||| || || || ||||| || || || || || | |||||| Sbjct 2001 ATCAATA--GTATCCGAGCTCTCAACCTCTAAAGTGATCGTCTTCCCAGTAAGAGTTTTC 2058 Query 39706 ACGAAGATCTGCAT 39719 || ||||||||||| Sbjct 2059 ACAAAGATCTGCAT 2072 >seq12130 Length=7920 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||| ||||| |||||| ||| |||| ||||| |||||||| |||| Sbjct 5330 TTCCTTCTGAATATTGTAATCCGCCAAAGTGCGCCCATCCTCCAACTGTTTCCCAGCAAA 5389 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTT-TGTTTA-ATC 39645 ||| || | ||||||||| | || | ||||| || || || || | || | || Sbjct 5390 AATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATCTTCGTCTTGACATT 5449 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 ||| || ||| |||| || |||| || || || || || || || || || || || Sbjct 5450 ATCGATAGTGTCGCTGCTCT--CCACCTCTAAGGTGATGGTCTTGCCAGTCAATGTCTTG 5507 Query 39706 ACGAAGATCTGCAT 39719 || ||||||||||| Sbjct 5508 ACAAAGATCTGCAT 5521 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||| ||||| || ||| ||| |||| |||||||||||||| |||| Sbjct 544 TTCCTTCTGAATATTGTAATCAGCTAAAGTGCGCCCATCCTCCAATTGTTTCCCAGCAAA 603 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || || | ||||||||| | || | || || ||||| || || || | | Sbjct 604 GATCAACCTCTGCTGATCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGTCTTCACATT 663 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | ||||| ||| ||||| ||||| || || || || || || || || || || Sbjct 664 ATCAATGGTGTCGCTGCTCTCCACCTCCAAGGTGATAGTCTTCCCAGTCAATGTCTTGAC 723 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 724 GAAGATCTGCAT 735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346066846762760