Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5880 140 4e-28 seq407 136 5e-27 seq100015 125 9e-24 seq33024 118 1e-21 seq2381 116 5e-21 seq80314 96.9 4e-15 seq108 82.4 9e-11 >seq5880 Length=12336 Score = 140 bits (154), Expect = 4e-28 Identities = 331/495 (67%), Gaps = 14/495 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || || || |||||| || ||| | | || || || Sbjct 7760 CGGTCAAATCGTCCTGGCCTCAGCAGAGCAGAATCAAGAATGTCAGCTCTGTTAGTAGCA 7819 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || || |||| || || || | ||||||||||||||||| || | |||||| || Sbjct 7820 GCAATTACAATGATGCCGGTATTACCCTCAAAACCATCCATCTCCGTGAGAAGCTGATTC 7879 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 16061 | || ||||||| |||||||||| || |||| |||| || | ||| | ||| Sbjct 7880 AACGTCTGTTCCCTTTCATCATTCCCT---CCACCAATTCCAGTACCTCTCTGCCTCCCC 7936 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121 || ||||| || ||||||| || || || ||||| |||||| || || ||| Sbjct 7937 ACTGCATCTATTTCATCAACAAAAACAATACATGGAGCATTTTCTTTTGCCTTTTTAAAT 7996 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || || |||||||||||||||||||| ||||| | | | ||| Sbjct 7997 AGATCACGCACTCGAGATGCACCCACACCAACAAACATCTCTACAAATTCGGAACCAGAA 8056 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || | || || || ||| || ||| || ||||| || || || | ||||| || Sbjct 8057 -ATGGAGAAAAATGGAACACCAGCTTCTCCAGCAATAGCCTTTGCAAGCAATGTCTTTCC 8115 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 16300 |||||||| |||| | || || ||||| || || || ||| | | | | Sbjct 8116 GGTACCTGGAGGACCCACAAGAAGAACACCTTTAGGGATGCGAGCTCCAACTGCTGTGAA 8175 Query 16301 TCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGCGTC 16357 |||||||| | ||||| || || |||| ||||| || || | || || | || Sbjct 8176 CCTCTCAGGCTTTTTAAGGAACTCGACAA---CTTCCATGAAATCCTGCTTTGCTTCATC 8232 Query 16358 AATCCCCTCAACATC 16372 || ||| ||||||| Sbjct 8233 AACCCCAGCAACATC 8247 >seq407 Length=47313 Score = 136 bits (150), Expect = 5e-27 Identities = 254/369 (69%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || || || |||||| || ||| | | || ||||| Sbjct 36713 CGGTCAAAACGTCCTGGCCTCAGAAGAGCTGAATCAAGAATGTCAGCTCTGTTAGTTGCA 36654 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || || || | | || || |||| ||||| ||||||||||| || | |||||| Sbjct 36653 GCAATTACTATTACGCCAGT---GTTACCCTCAAAGCCATCCATCTCAGTGAGAAGCTGA 36597 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 16061 |||| |||||||||| |||||||||| || | | |||| || | ||| | || Sbjct 36596 TTAAGTGTTTGTTCCCTTTCATCATTCCCTCCCCCAATTCCAGTACCTCTTTGTCTCCCA 36537 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121 || |||||||| ||||||| || || |||||||| |||||| || || |||| Sbjct 36536 ACAGCATCAATTTCATCAACAAAAACAATGCATGGAGCATTTTCTTTCGCCTTTTTAAAG 36477 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || || ||||| |||||||||||||| || || | || | ||| Sbjct 36476 AGATCACGCACTCGAGAAGCACCCACGCCAACAAACATCTCAACGAATTCTGAACCCGAA 36417 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || | || || || ||| | ||| || ||||| || || || || ||||| || Sbjct 36416 -ATGGAGAAAAATGGCACACCTGCTTCCCCTGCAATAGCCTTTGCCAGCAGGGTCTTTCC 36358 Query 16241 CGTACCTGG 16249 || ||||| Sbjct 36357 TGTCCCTGG 36349 >seq100015 Length=1511 Score = 125 bits (138), Expect = 9e-24 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || ||||||||| | |||| || || |||||||| || || ||||||||||| |||| Sbjct 1388 TTCGCTGAGCGAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTC 1329 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||||||||| ||||| | |||||||| || |||||| |||||| Sbjct 1328 TGCGCGATATTTTGGCTCAAGAAACGAGGGTTAATGCCAGGGCTTACCTTCTCGAACGAG 1269 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | || ||||| ||||||||| | ||| Sbjct 1268 TTGATTTCTCGAGACGAGGGATTACAC 1242 >seq33024 Length=3557 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || ||||||||| | |||| || || |||||||| || || ||||||||||| |||| Sbjct 1480 TTCGCTGAGCGAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTC 1421 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||||||||| ||||| | ||||| || || |||||| |||||| Sbjct 1420 TGCGCGATATTTTGGCTCAAGAAACGAGGATTAATGCCGGGGCTTACCTTCTCGAACGAG 1361 Query 102294 CTTATCTCTCGTGACGAGGG 102313 | || ||||| |||||||| Sbjct 1360 TTGATTTCTCGAGACGAGGG 1341 >seq2381 Length=21385 Score = 116 bits (128), Expect = 5e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || ||||| |||||| | | |||||||| |||||||| || || ||||||||||| | Sbjct 14136 TCGTTTGCAGAGCGAATAATTGCATTTGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGC 14077 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||||||||||| | ||||| || ||||| ||| | ||||| || || |||||| ||| Sbjct 14076 TTCTGCGCTATATTCTGGCTGAAAAAGCGTGGTTTAATGCCTGGACTAACCTTCTCTAAC 14017 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCA 102319 ||| | || ||||| ||||| || || || Sbjct 14016 GAGTTAATTTCTCGAGACGAAGGGCTTCA 13988 >seq80314 Length=1716 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 ||||| |||||| | | |||||||| |||||||| || | ||||||||||| || Sbjct 810 TTTGCAGAGCGAATAATTGCATTTGCTTGTGTTGAAGGAGTATTCTTCTCTGGAAGTTTA 869 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 || ||||| | ||||| || ||||||||| | ||||| || || |||||| || ||| Sbjct 870 TGTGCTATATTCTGGCTGAAAAAGCGAGGTTTAATGCCTGGACTAACCTTCTCTAATGAG 929 Query 102294 CTTATCTCTCGTGACGAGGGACTCCA 102319 | || ||||| ||||| || || || Sbjct 930 TTAATTTCTCGAGACGAAGGGCTTCA 955 >seq108 Length=40423 Score = 82.4 bits (90), Expect = 9e-11 Identities = 190/285 (67%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| ||||| | ||| |||||||| || |||| |||||||| | Sbjct 19241 AACCCATCCATCTCAGTCAACAACTGATTAATAGTCTGCTCCCTCTCATCATTTCC---- 19186 Query 16035 ATACCA-CCAGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 |||| ||| | ||| | ||| | || || ||||| ||||||||||| || || Sbjct 19185 --ACCACCCATCCCTGCCCCTCTCTGCCTCCCAACCGCATCTATCTCATCAATAAACACA 19128 Query 16089 ATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 16144 ||||| || ||| | || || | ||||| | |||| || | | || || Sbjct 19127 ATGCAAGGCGCCTTGCTCTTTGCCTTC----TCAAACAAGTCCCTAACTCTACTTGCCCC 19072 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204 || || ||||||| ||| ||||| | | || | |||| || ||| || || | Sbjct 19071 AACCCCGACAAACAACTCTACAAACTCAGAAGCTGCACATGAGAAGAACGGTACTCCTGC 19012 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || | ||||| || || | || || ||||||||||| Sbjct 19011 CTCACCAGCGACGGCTCTTGCCAGCAACGTTTTTCCCGTACCTGG 18967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618354714358400