Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq80314 111 2e-19 seq5880 95.1 1e-14 seq2381 95.1 1e-14 seq9116 84.2 3e-11 >seq80314 Length=1716 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 |||||||||||| || ||||| || | ||||||| |||| ||||||||||| | || Sbjct 956 ATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCAGGCATTAAACC 897 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 || || || ||||| || || ||||| ||||||||||| ||||| | || || ||||| Sbjct 896 TCGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAGAAGAATACTCCTTCAACACA 837 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACC-ACTTGAGAGCCC 119685 || || || | || ||||| ||||| | ||| ||| | || || | || |||| Sbjct 836 AGCAAATGCAATTATTCGCTCTGCAAACAATTATGACCCGTCAATCCAACGTAAG-GCCC 778 Query 119686 AGTTGGCCTTACGCT 119700 | | |||||||||| Sbjct 777 AATCAGCCTTACGCT 763 >seq5880 Length=12336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 294/451 (65%), Gaps = 12/451 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | || |||||| ||||||||| || | | ||| ||||| Sbjct 7760 CGGTCAAATCGTCCTGGCCTCAGCAGAGCAGAATCAAGAATGTCAGCTCTGTTAGTAGCA 7819 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 ||||| || | ||||| || | | || ||||| ||||| || ||||||||||| || Sbjct 7820 GCAATTACAATGATGCCGGTATTACCCTCAAAACCATCCATCTCCGTGAGAAGCTGATTC 7879 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCAT--ACCACCTGCCGAA---CGCTTCTTAC 11677 | ||||||||| | ||||| || | | |||| | | | | | || | | | Sbjct 7880 AACGTCTGTTCCCTTTCATCATT-----CCCTCCACCAATTCCAGTACCTCTCTGCCTCC 7934 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | || || || || ||||| | || || ||||| || || | ||||| || | Sbjct 7935 CCACTGCATCTATTTCATCAACAAAAACAATACATGGAGCATTTTCTTTTGCCTTTTTAA 7994 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | || ||||| || || || || ||||| || |||||||| || || | | ||| Sbjct 7995 ATAGATCACGCACTCGAGATGCACCCACACCAACAAACATCTCTACAAATTCGGAACCAG 8054 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 || | || | || |||||| || || ||||| || || || || | ||||| Sbjct 8055 AA-ATGGAGAAAAATGGAACACCAGCTTCTCCAGCAATAGCCTTTGCAAGCAATGTCTTT 8113 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || ||||| || | ||| | ||||| | || ||||| || ||| | | | Sbjct 8114 CCGGTACCTGGAGGACCCACAAGAAGAACACCTTTAGGGATGCGAGCTCCAACTGCTGTG 8173 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAA 11947 | | ||||||||| || ||||| || |||| Sbjct 8174 AACCTCTCAGGCTTTTTAAGGAACTCGACAA 8204 >seq2381 Length=21385 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 |||||||||||| || ||||| || | ||| ||| |||| ||||||||||| | || Sbjct 13987 ATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGCATTAAACC 14046 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | || || ||||| || || || || || |||||||| ||||| || || || ||||| Sbjct 14047 ACGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACA 14106 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGT--CGAGACTTGTCGAACCA-CTTGAGAGC 119683 || || || | || ||||| ||||| | | ||| | ||| | ||| | | || || Sbjct 14107 AGCAAATGCAATTATTCGCTCTGCAAACGATTCCGAACCGTGT--ATCCAGCGTAAG-GC 14163 Query 119684 CCAGTTGGCCTTACGCT 119700 ||| | |||||||||| Sbjct 14164 CCAATCAGCCTTACGCT 14180 >seq9116 Length=9520 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 6939 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 6884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586710503816000