Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5880 143 3e-29 seq407 131 2e-25 seq6823 91.5 2e-13 seq2381 89.7 6e-13 seq108 82.4 9e-11 >seq5880 Length=12336 Score = 143 bits (158), Expect = 3e-29 Identities = 268/390 (69%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || || || |||||| || ||| | | || || || Sbjct 7760 CGGTCAAATCGTCCTGGCCTCAGCAGAGCAGAATCAAGAATGTCAGCTCTGTTAGTAGCA 7819 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || || |||| || || || | | ||||||||||||||||| || | ||| || || Sbjct 7820 GCAATTACAATGATGCCGGTATTACCCTCAAAACCATCCATCTCCGTGAGAAGCTGATTC 7879 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||||| |||||||||| || |||| |||| || | ||| | ||| Sbjct 7880 AACGTCTGTTCCCTTTCATCATTCCCTCC---ACCAATTCCAGTACCTCTCTGCCTCCCC 7936 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||||| || ||||||||||| |||||| || ||| ||| Sbjct 7937 ACTGCATCTATTTCATCAACAAAAACAATACATGGAGCATTTTCTTTTGCCTTTTTAAAT 7996 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || || | || |||||||||||||||||||| ||||| | | | ||| Sbjct 7997 AGATCACGCACTCGAGATGCACCCACACCAACAAACATCTCTACAAATTCGGAACCAGAA 8056 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | || || || ||| || ||| || ||||| || || || | ||||| || Sbjct 8057 -ATGGAGAAAAATGGAACACCAGCTTCTCCAGCAATAGCCTTTGCAAGCAATGTCTTTCC 8115 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 |||||||| |||| | || || |||| Sbjct 8116 GGTACCTGGAGGACCCACAAGAAGAACACC 8145 >seq407 Length=47313 Score = 131 bits (144), Expect = 2e-25 Identities = 250/366 (68%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || || || |||||| || ||| | | || || || Sbjct 36713 CGGTCAAAACGTCCTGGCCTCAGAAGAGCTGAATCAAGAATGTCAGCTCTGTTAGTTGCA 36654 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || || || | | || || | | ||||| ||||||||||| || | ||| || ||| Sbjct 36653 GCAATTACTATTACGCCAGTGTTACCCTCAAAGCCATCCATCTCAGTGAGAAGCTGATTA 36594 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | |||||||||| |||||||||| || | | |||| || | ||| | || || Sbjct 36593 AGTGTTTGTTCCCTTTCATCATTCCCTCCCCCAATTCCAGTACCTCTTTGTCTCCCAACA 36534 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||| ||||||| || ||||| ||||| |||||| || ||| ||||||| Sbjct 36533 GCATCAATTTCATCAACAAAAACAATGCATGGAGCATTTTCTTTCGCCTTTTTAAAGAGA 36474 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || || || | || ||||| |||||||||||||| || || | || | ||| || Sbjct 36473 TCACGCACTCGAGAAGCACCCACGCCAACAAACATCTCAACGAATTCTGAACCCGAA-AT 36415 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | || || || ||| | ||| || ||||| || || || || ||||| || || Sbjct 36414 GGAGAAAAATGGCACACCTGCTTCCCCTGCAATAGCCTTTGCCAGCAGGGTCTTTCCTGT 36355 Query 9551 ACCTGG 9556 ||||| Sbjct 36354 CCCTGG 36349 >seq6823 Length=41093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226 || || ||||| || ||||| ||||||||||| |||| || ||| | ||| |||| || Sbjct 37514 TGAGGCCTTGGCGTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAAAC-CACCTCTG 37572 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||| | | ||| || | | | ||||||| || ||| ||||||||| | || Sbjct 37573 AGACATATAATGGTAAGTTGAAATGGCTGAATCAACATCCTCCTTGTGGATGCCTACTGC 37632 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| | ||||| ||| ||| | |||| | | |||| || || | | || | Sbjct 37633 AACTCTCATTATCATGTGTTGTGGTCTCTCCACAACCTTCCCATTGA-CCTTCAACAGGT 37691 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | | ||||||||||||||| |||||| ||| || | ||| | |||| Sbjct 37692 ATGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAATCCC 37739 >seq2381 Length=21385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || || || ||||| ||||| | || || |||||| ||| || ||||| | ||| Sbjct 13988 TGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGCATTAAACCA 14047 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 ||||| |||| ||| | ||||||||||| || |||||||| || || || ||||| Sbjct 14048 CGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAA 14107 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| |||| | ||||| || || || Sbjct 14108 GCAAATGCAATTATTCGCTCTGCAAACGA 14136 >seq108 Length=40423 Score = 82.4 bits (90), Expect = 9e-11 Identities = 190/285 (67%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| ||||| | || |||||||| || |||| |||||||| | Sbjct 19241 AACCCATCCATCTCAGTCAACAACTGATTAATAGTCTGCTCCCTCTCATCATTTCC---- 19186 Query 9342 ATACCA-CCAGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 |||| ||| | ||| | ||| | || || ||||| ||||||||||| || ||| Sbjct 19185 --ACCACCCATCCCTGCCCCTCTCTGCCTCCCAACCGCATCTATCTCATCAATAAACACA 19128 Query 9396 ATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCC 9451 || || || ||| | || || | ||||| | || | ||| || | || || Sbjct 19127 ATGCAAGGCGCCTTGCTCTT----TGCCTTCTCAAACAAGTCCCTAACTCTACTTGCCCC 19072 Query 9452 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 9511 || || ||||||| ||| ||||| | | || | |||| || ||| || || | Sbjct 19071 AACCCCGACAAACAACTCTACAAACTCAGAAGCTGCACATGAGAAGAACGGTACTCCTGC 19012 Query 9512 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| || | ||||| || || | || || ||||||||||| Sbjct 19011 CTCACCAGCGACGGCTCTTGCCAGCAACGTTTTTCCCGTACCTGG 18967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587711438852800