Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1 491 5e-134 seq480 105 8e-18 >seq1 Length=146306 Score = 491 bits (544), Expect = 5e-134 Identities = 681/951 (72%), Gaps = 2/951 (0%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || |||||||||||| | ||||| || ||| | || ||| | | ||| || || | Sbjct 87909 GGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGACTGCAACTTC-TGTATTTATTAT 87967 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || |||||||| || ||||| || ||||| || || || | ||||| || | || || Sbjct 87968 AGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 88027 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 | | | || || ||||| || || |||||||| || |||| | || ||||| || Sbjct 88028 TCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 88087 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | ||||| || ||||| |||||||||||| |||||||||| ||||| || |||||||| Sbjct 88088 GTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGG 88147 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 ||||||| || | | | | |||||| | ||||| | | || ||||| | | Sbjct 88148 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 88207 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| | | | | || |||||||||||||| ||||||||| || || || Sbjct 88208 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 88267 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || | || || || || ||||| | |||||| | ||||| || || ||||| Sbjct 88268 GGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGA 88327 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| ||||| || || |||||||||||||| ||| | || ||||| || ||||| Sbjct 88328 TGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 88387 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 ||||| || ||||| || || |||||| || ||||| || | ||||| || || | Sbjct 88388 CAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCT 88447 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 ||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| | Sbjct 88448 ATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 88507 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || || | ||||| | ||||| ||||| |||||||| || || || ||||| Sbjct 88508 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 88567 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 || || ||||| |||||||| | |||||||| |||||| ||||| || || | Sbjct 88568 TGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTC 88627 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 | ||||||||||| |||| | || || || ||| || | ||||| || || | ||||| Sbjct 88628 TTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 88687 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAA 170282 |||| ||||| |||||||| ||||||||||| || |||||||| || |||||| | | Sbjct 88688 TAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 88747 Query 170283 CGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGT 170342 || | | || |||| |||| | | ||| | || ||| | ||||||||||| Sbjct 88748 AGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGT 88807 Query 170343 TATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 |||||||||| | ||||| || |||||||| |||||| |||| ||| ||| Sbjct 88808 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858 Score = 325 bits (360), Expect = 5e-84 Identities = 700/1047 (67%), Gaps = 31/1047 (3%) Strand=Plus/Minus Query 170525 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTC 170584 || ||||||| || | || ||||||||| ||||| ||||| || || |||| ||||| Sbjct 58155 TTTGTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTC 58096 Query 170585 TGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTAC 170644 |||||| || || | |||||||| || | | | || |||||||| || || || Sbjct 58095 TGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGAC 58036 Query 170645 CTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTT 170704 || || || ||||||||||| ||||| | || || ||| | || || || || || Sbjct 58035 GTTTGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAATTT 57976 Query 170705 CCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTC 170759 | |||| ||||| ||||| || |||| ||| | | || | |||| |||| Sbjct 57975 CTTAACCGCAGCCGTTTCTACTCCTG-----CTAATAGTTTAGCACACTCTTTGTTGTTG 57921 Query 170760 CTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGG 170819 || ||||| |||||||||||||| ||| |||||||| ||| | || || | ||| Sbjct 57920 CTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGG 57861 Query 170820 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAG 170879 | ||||| || | ||||| | || ||||| |||||||| ||| | | ||||| || Sbjct 57860 ACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAA 57801 Query 170880 ATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCA 170939 | || || ||| | | ||||| || ||| |||||||||||| || || Sbjct 57800 CTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCT 57741 Query 170940 GTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCA 170999 || || | | || || || ||||||||||| ||| |||||||||| || || Sbjct 57740 GTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCT 57681 Query 171000 TCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATT 171059 || ||||| ||||| || || || | ||| | || | ||||| || || || Sbjct 57680 AGTTTTGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGG 57621 Query 171060 ACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGT 171119 || |||| || ||||| |||||||| ||||| || || | || | || | ||||| Sbjct 57620 ACGCTGAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGT 57561 Query 171120 GCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGAT 171179 || ||||||||||| || || | || || || | ||||| || |||| Sbjct 57560 GCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAG------------ATGGTGAT 57513 Query 171180 AATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTAC 171239 |||| |||||||| || ||| | || || || | || |||||||| Sbjct 57512 -----GGGGCAAA----TACATTCCGGGCTTTTAACCCAACCCAAGCTGAGGAAACTTAT 57462 Query 171240 AGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAA 171299 ||| | || || ||| | || ||||| || || ||||| ||||||| || || ||| Sbjct 57461 TCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAA 57402 Query 171300 AGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATA 171359 | | ||||| ||| ||||||| || || || || | ||| | |||| || | Sbjct 57401 CGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTT 57342 Query 171360 GGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGA 171419 || | || ||||| || | ||||| | || || || || || || || || || | Sbjct 57341 GGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGT 57282 Query 171420 GCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGT 171479 ||||| ||||| || || || |||||||||||||| || ||||| || | || |||||| Sbjct 57281 GCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGT 57222 Query 171480 ATGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAA 171539 || | || |||||| | | || || || ||||| ||| | ||||||| || || Sbjct 57221 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 57162 Query 171540 GTGTTACCAAGAGGTAACGCACTTTAA 171566 || |||| | || ||||| |||||| Sbjct 57161 GTTCTACCCCGTGGAAACGCTCTTTAA 57135 >seq480 Length=60730 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 153253 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 153312 |||| || | ||||||||| ||||||| || ||||| || || ||||||||||| | Sbjct 35747 GAAATATTATGGAGAATCCTGGTTGGTATACTCAATACACACCTTACCAAGCTGAGATTT 35806 Query 153313 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGAT 153372 ||||||| | |||||| |||| || |||| |||||| | || || || ||||| || | Sbjct 35807 CTCAGGGTCGTTTGGAATCTTTGTTGAATTTCCAAACTATGATTACTGATCTTACTGGTT 35866 Query 153373 TACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 |||| || | || || || || | ||||| | ||| || || || || || ||| Sbjct 35867 TACCTATGTCTAATGCCTCATTACTTGATGAGGGAACCGCGGCCGCTGAGGCGATG 35922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576984857964800