Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1 592 2e-164 >seq1 Length=146306 Score = 592 bits (656), Expect = 2e-164 Identities = 731/994 (74%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||||| | ||| |||| | || | || |||||||| || |||| ||||| || || | Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAA-AACCGCCTTTACATCGGGTGGTTTGGTGTTTT 87925 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||| || || | ||| | |||||| ||||| || || | |||||| | ||||||| Sbjct 87926 GATGATCCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTC 87984 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || |||||||| || |||| || || | || || |||| Sbjct 87985 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 88044 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | || || |||||||| || | ||| ||||| ||||| || | ||||| ||||| | Sbjct 88045 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAA 88104 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||||||||| | ||||||||||| || || |||||||||| | ||| | | Sbjct 88105 TATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 88164 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | |||||| | | ||| | | || ||||| ||||| ||||||||| | | Sbjct 88165 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 88224 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 || | ||||||||||| ||||| ||||||||| || || || || || || || | || Sbjct 88225 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTG 88284 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | || ||| | | || || |||||||||| ||||| ||||||| ||||| || |||| Sbjct 88285 CGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 88344 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 | || || || ||||||| |||| | || ||||| ||||||||||| || || ||||| | Sbjct 88345 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 88404 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 168460 | || || ||| | || || ||||| ||||| || ||| | |||||||||||||| | Sbjct 88405 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 88464 Query 168461 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 168520 | ||||| |||||| | | | || || || || |||| ||||| || | | Sbjct 88465 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 88524 Query 168521 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 168580 |||||| ||||| ||||| |||||||| || || |||||||| ||||||||||| || | Sbjct 88525 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 88584 Query 168581 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 168640 |||| || ||||||||||| ||| ||||| || || || || || ||||||||| | | Sbjct 88585 GTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAG 88644 Query 168641 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 168700 |||| ||||| || || || || ||||| || || | || | ||| ||||| |||| Sbjct 88645 CTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCA 88704 Query 168701 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 168760 || | || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 88705 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 88764 Query 168761 CCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 168820 | ||||| ||| | | ||||| ||| || |||||||||||||||||||| ||||| | Sbjct 88765 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 88824 Query 168821 CACACAACTTCCCACTCGATCTTGCTGCTGCTGA 168854 | || |||||||| || || | ||||||| ||| Sbjct 88825 CTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858 Score = 533 bits (590), Expect = 2e-146 Identities = 729/1017 (72%), Gaps = 6/1017 (1%) Strand=Plus/Minus Query 169306 GTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGG 169365 ||| ||| || | ||||||||| | | ||||| || || || | ||||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 169366 TCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTT 169425 |||| | || |||| ||| ||| | ||| | || || ||| | || ||||| |||| Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 169426 TGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTT 169482 ||| || || ||||| ||||| || | || ||||| || | |||||| || || Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGC---CAGTTCCTATTTGGAAGGCTGCAATTT 57976 Query 169483 CCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATG 169542 | | || || || || ||| |||||| | | | | |||||| || | ||||| || Sbjct 57975 CTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTG 57916 Query 169543 GGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTT 169602 |||||| ||||||||||| ||||| ||| ||||||||||| || || || |||| || Sbjct 57915 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTT 57856 Query 169603 TGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGC 169662 ||| || |||||||| || || | | | || ||||| ||| | | || || ||| | || Sbjct 57855 TGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGC 57796 Query 169663 ACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATT 169722 || | || | || ||||||||||| || ||||||||||| || |||||||| || Sbjct 57795 TCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 57736 Query 169723 TGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTT 169782 ||| ||| || || || || ||||| || ||||| ||||||||||| || || Sbjct 57735 TGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 57676 Query 169783 TGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTT 169842 ||| ||| |||| || ||| | ||| | | || | ||||| || || || |||||| | Sbjct 57675 TGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 57616 Query 169843 GAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTAT 169902 ||| || || || |||||||| || || || | ||||||| || |||| | |||||| Sbjct 57615 GAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTAT 57556 Query 169903 CCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAA 169962 ||||||| ||| ||||| || || || | |||||| ||||| ||||||||| ||| Sbjct 57555 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCG 57496 Query 169963 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 170022 ||| ||| | | || || | || || |||||||| |||||||| || ||||| || || Sbjct 57495 GGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 57436 Query 170023 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTT 170082 ||| || ||||| || |||| ||||| || || |||||| | ||||| || ||||| || Sbjct 57435 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 57376 Query 170083 TGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCT 170142 ||| || || | ||| | |||| || |||| | | || || || | || || Sbjct 57375 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 57316 Query 170143 TCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 170202 ||||| || || ||||| ||||| ||| | ||||| |||||||| ||||||||||| Sbjct 57315 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGAC 57256 Query 170203 CTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGA 170262 |||||||||||||| || || || || ||||| ||||||| ||| |||| || || Sbjct 57255 TTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 57196 Query 170263 TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||| || ||||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 57195 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572263887297600