Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq1 618 5e-172 >seq1 Length=146306 Score = 618 bits (684), Expect = 5e-172 Identities = 718/966 (74%), Gaps = 2/966 (0%) Strand=Plus/Plus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACC 163871 |||||||| || | || ||||| || ||| ||||||||||||| | | | ||||| Sbjct 87894 AACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGACTGCAACT 87953 Query 163872 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 ||||| || || | |||||| | |||||||| || || || || |||||||||||||| Sbjct 87954 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 88012 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990 ||||||| | || || || | || || ||||| || || |||||||| || |||| | Sbjct 88013 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 88072 Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050 || || || || | ||||| || || || |||||||| ||||| ||||||| || Sbjct 88073 TTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGATGAGTG 88132 Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGC 164110 | | ||||| |||||||||| | || | || | |||||| | | ||| | | Sbjct 88133 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 88192 Query 164111 ATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGT 164170 || |||||||||||||||||||| || |||||| |||||||||||||||||| ||| Sbjct 88193 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 88252 Query 164171 TGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 164230 ||| || || || || ||||| || || | || || ||| || |||| || ||||||| Sbjct 88253 TGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAATCGGTCA 88312 Query 164231 AGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGT 164290 ||| || ||||| | ||||| || || || ||||| || ||||||| |||| | || Sbjct 88313 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 88372 Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350 ||||| || |||||||||||||| |||||||| || || ||| | || || ||||| || Sbjct 88373 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 88432 Query 164351 ATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 164410 ||| ||||| || || || ||||| ||||| ||||| |||| |||||| || | | Sbjct 88433 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 88492 Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470 |||||||| |||| ||| || || | ||||||| || |||||||| |||||||| Sbjct 88493 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 88552 Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530 || || || || || ||||| ||||| |||||||| | ||||||||||| ||| || Sbjct 88553 TTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTT 88612 Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTT 164590 ||| || || ||||| || ||||||||| | ||||| ||||| || || || || ||||| Sbjct 88613 CAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTATTTGGTT 88672 Query 164591 CACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 164650 || || | ||| || ||| ||||| |||||| | || |||||||| |||||||| || Sbjct 88673 TACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCAACCAATC 88732 Query 164651 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGG 164710 | | ||| |||| |||||||| | || |||||||| || | | ||||| ||| Sbjct 88733 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAA 88792 Query 164711 TCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGC 164770 || ||||||||||||||||| || ||||| ||||| ||||||||||| || | ||||| Sbjct 88793 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGC 88852 Query 164771 TGCTGA 164776 || ||| Sbjct 88853 TGTTGA 88858 Score = 581 bits (644), Expect = 4e-161 Identities = 743/1017 (73%), Gaps = 6/1017 (1%) Strand=Plus/Minus Query 165193 GTTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGG 165252 ||| ||| | | ||||||||| | |||| |||||||||||||| ||||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 165253 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 165312 || | || ||||| ||||||| | ||| | || |||||| |||| || || || || Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 165313 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTC 165371 | ||| |||||||| || |||||||| ||||||||| |||| || ||||| |||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTC 57975 Query 165372 TTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGG 165430 ||| | || || ||||||||||| || | | | | || ||| | || | || ||| Sbjct 57974 TTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGG 57915 Query 165431 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTT 165490 |||||||| || ||||| ||||| | ||| ||| | || || || ||| ||||| Sbjct 57914 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 57855 Query 165491 GTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCA 165550 || || || || || ||||||| ||||| ||||| ||| | || || || ||| | || Sbjct 57854 GTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 57795 Query 165551 CG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTT 165609 || ||| || | | || || || ||||| || || |||||||| || || |||||||| Sbjct 57794 CGATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 57736 Query 165610 TGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 165669 |||| || || || || || || || || || || ||||||| || || || ||| Sbjct 57735 TGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 57676 Query 165670 CGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTT 165729 || || ||||| || ||| | ||| | ||||| | ||||| || ||||| ||||| | Sbjct 57675 TGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 57616 Query 165730 GAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCAT 165789 ||| || |||||||||||||| ||||| ||| | |||| | || |||| | ||| || Sbjct 57615 GAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTAT 57556 Query 165790 CCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAA 165849 ||||||| ||| ||||| |||||| | | | |||||||||| | |||||||| ||| Sbjct 57555 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCG 57496 Query 165850 GGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTG 165909 ||| ||| || | || |||| || ||||| || |||||||| || || |||||||| || Sbjct 57495 GGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 57436 Query 165910 GTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTT 165969 ||| || ||||| || |||| ||| ||||| | ||||| |||||||||||| | || Sbjct 57435 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 57376 Query 165970 TGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 166029 ||| || || | ||| | |||| ||| | | || | | ||||| || | ||||| Sbjct 57375 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 57316 Query 166030 TCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAAC 166089 ||||| |||||||| || ||||| || ||| | ||||| ||||| || || ||||| || Sbjct 57315 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGAC 57256 Query 166090 CTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGA 166149 |||||||| ||||| |||||||| || |||||| ||||||||||| |||| | || Sbjct 57255 TTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 57196 Query 166150 TCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 ||| || ||||| ||| || | |||||||| || ||||| || | || ||||| || Sbjct 57195 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554782588756800