Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 452 5e-122 seq480 96.9 4e-15 >seq1 Length=146306 Score = 452 bits (500), Expect = 5e-122 Identities = 693/988 (70%), Gaps = 0/988 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| || | ||| | |||| | || ||||| ||||| | Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | || |||||||| || ||| Sbjct 87927 ATGATCCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCT 87986 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 87987 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 88046 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || || |||||||| || |||| | || || ||||| | ||||| || || || Sbjct 88047 ATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATA 88106 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||||||| | || ||||| ||||| |||||||||||||||||| || | | | Sbjct 88107 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTT 88166 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 88167 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 88226 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| || || | || || ||| Sbjct 88227 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCG 88286 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| || Sbjct 88287 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATT 88346 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||| ||| | || ||||| || ||||| ||||| || ||||| || Sbjct 88347 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 88406 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| || ||||| || | || || || || |||| || ||||| ||| Sbjct 88407 TTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 88466 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || || || || ||| | | ||||| || || || ||| ||||| || | || Sbjct 88467 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 88526 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 |||| ||||| ||||| |||||||| || || || ||||| || || ||||| |||||| Sbjct 88527 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGT 88586 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 || | |||||||| |||||| |||||| || || | | | ||||||||| |||| Sbjct 88587 CGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCT 88646 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || || || ||| || | ||||| || || | ||||| | || ||||| |||||| Sbjct 88647 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAAC 88706 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 | || |||||||| ||||||||||| || || ||| | | ||| | || ||| Sbjct 88707 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACT 88766 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| | ||||| | || ||||| ||||||||||||||||||||| | ||||| Sbjct 88767 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 88826 Query 172780 CACAACTTCCCATTAGACCTTGCTTCTG 172807 || |||||||| ||||| | ||| ||| Sbjct 88827 CATAACTTCCCTCTAGACTTAGCTGCTG 88854 Score = 336 bits (372), Expect = 3e-87 Identities = 705/1053 (67%), Gaps = 31/1053 (3%) Strand=Plus/Minus Query 172941 AAGAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGG 173000 || || || ||||||| || | || ||||||||| ||||| |||||||| || | || Sbjct 58161 AAAAGATTTGTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGG 58102 Query 173001 ATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGG 173060 ||||||||||| || || | ||||||||||| | || | || |||||||| || Sbjct 58101 TTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGG 58042 Query 173061 AACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGC 173120 || || || || || ||||||||||| ||||| | || ||| ||| | ||||| Sbjct 58041 TACGACGTTTGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTG 57982 Query 173121 AAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT-- 173175 || || ||||| ||||| || || || |||| ||| | | || | |||| Sbjct 57981 CAATTTCTTAACCGCAGCCGTTTCTACTCCTG-----CTAATAGTTTAGCACACTCTTTG 57927 Query 173176 CTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGA 173235 |||| || ||||| |||||||||||||| || ||||||| ||| | || || Sbjct 57926 TTGTTGCTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGC 57867 Query 173236 CTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAG 173295 || |||| ||||| || | ||||| | || ||||| |||||||| ||| | || || Sbjct 57866 CTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAA 57807 Query 173296 TTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTT 173355 || || | || || ||| | | ||||| || ||| |||||||||||| Sbjct 57806 TTCGAACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCA 57747 Query 173356 ATCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTC 173415 || || || || | | || |||| || |||||||| ||| |||||||||| Sbjct 57746 ATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTT 57687 Query 173416 GCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCAC 173475 || ||| || ||||| ||||| || || || | ||| | || | ||||| || || Sbjct 57686 GCGCCTAGTTTTGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCAT 57627 Query 173476 AACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTA 173535 || || |||| || ||||| |||||||| ||||| || || | || | || | Sbjct 57626 AATTGGACGCTGAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTG 57567 Query 173536 CTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATAT 173595 |||||||| ||||||||||| || || | || || || | ||||| || Sbjct 57566 CTATGTGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAG------------AT 57519 Query 173596 ACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAA 173655 ||| || | | || ||| | || ||| | || || || | || ||| Sbjct 57518 GGTGATGG---------GGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCTGAGGAA 57468 Query 173656 ACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCA 173715 |||||| ||| | || || ||| | || ||||| || || ||||| | || ||||| Sbjct 57467 ACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 57408 Query 173716 AACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCA 173775 || ||| | | ||||| ||| | ||||| || ||||| || | ||| | |||| Sbjct 57407 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 57348 Query 173776 TCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAG 173835 | | || | || ||||| || | ||||| | || || ||||| || || || || Sbjct 57347 GCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAA 57288 Query 173836 ATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAAT 173895 || | ||||| |||||||| || || |||||||||||||| || ||||| || | || Sbjct 57287 ATCCGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAAC 57228 Query 173896 GAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCA 173955 |||||||| | || |||||| | || |||||| || ||||| ||| | |||| || Sbjct 57227 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 57168 Query 173956 GAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 || || || |||| | || ||||| |||||| Sbjct 57167 GAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 57135 >seq480 Length=60730 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 157928 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 157987 |||| || | ||||||||| ||||||| || ||||| || || ||||||||||| | Sbjct 35747 GAAATATTATGGAGAATCCTGGTTGGTATACTCAATACACACCTTACCAAGCTGAGATTT 35806 Query 157988 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGAC 158047 ||||||| | |||||| |||| || |||| |||||| | || || || || || || Sbjct 35807 CTCAGGGTCGTTTGGAATCTTTGTTGAATTTCCAAACTATGATTACTGATCTTACTGGTT 35866 Query 158048 TACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 |||| || | || || || || | ||||| | ||| || || || || || ||| Sbjct 35867 TACCTATGTCTAATGCCTCATTACTTGATGAGGGAACCGCGGCCGCTGAGGCGATG 35922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585789261059200