Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1 616 2e-171 >seq1 Length=146306 Score = 616 bits (682), Expect = 2e-171 Identities = 723/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | |||||||| | ||||| || || |||| ||||| || ||| ||||||||||| Sbjct 87876 TGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCCT 87935 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | |||| | ||||| || || || |||||| | | ||||||||| || || Sbjct 87936 ACATTATTGACTGCAA-CTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGA 87994 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || ||||| ||| |||| || || | || || ||||| || || || Sbjct 87995 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTC 88054 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 |||||| || ||||| ||||| ||||| || | ||||| ||||| || |||||||| Sbjct 88055 TGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGC 88114 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 |||| | | || |||||||| |||||||||||||||| | || | ||| | ||||| Sbjct 88115 AGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTT 88174 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | |||| | | ||||||||||||||||||||||| || |||||| ||||| Sbjct 88175 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 88234 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 |||||| ||||| ||||||||| || ||||| || || || || |||| || ||| | Sbjct 88235 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTT 88294 Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575 |||| || |||||||||| ||| ||||| | |||||||| || || |||||||| Sbjct 88295 GATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTAC 88354 Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635 ||||||| |||| |||| ||||| || |||||||||||||| |||||||| || || || Sbjct 88355 TTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 88414 Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 | | || || ||||| ||||||||||| || || || ||||| ||||| ||||| |||| Sbjct 88415 GTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGT 88474 Query 167696 TACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 167755 || ||| || | | |||||||| |||| ||| || || | ||||||| || Sbjct 88475 AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 88534 Query 167756 CGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGAT 167815 |||||| || ||||| || ||||| ||||| |||||||||||||| || ||||| | || Sbjct 88535 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAAT 88594 Query 167816 CTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCC 167875 ||||||||| || ||||| || || || || | ||||||||||| || || ||||| Sbjct 88595 CTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCC 88654 Query 167876 TGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGG 167935 || || ||||| |||| |||||| | || || Sbjct 88655 GGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGG 88714 Query 167936 TTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGA 167995 |||||| |||||||| ||| | |||||||| ||| || | ||||||||| || Sbjct 88715 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGA 88774 Query 167996 CGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 168055 | | ||||||||| || ||||||||||||||||| || ||||||||||| ||||| Sbjct 88775 TATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 88834 Query 168056 CCCTCTCGACCTTGCTGCTGCTGA 168079 |||||| ||| | ||||||| ||| Sbjct 88835 CCCTCTAGACTTAGCTGCTGTTGA 88858 Score = 614 bits (680), Expect = 6e-171 Identities = 750/1017 (74%), Gaps = 6/1017 (1%) Strand=Plus/Minus Query 168482 GTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGG 168541 ||| ||| | | ||||||||| | | || |||||||||||||| ||||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 168542 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTT 168601 || | || ||||| ||||||| | ||| | || |||||| |||| || || | || Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 168602 CGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTC 168660 || ||| |||||||| || |||||||| ||||||||| |||| ||| |||| |||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTC 57975 Query 168661 TTA-CTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGG 168719 ||| | || || ||| |||||| || || | | | || ||| | || | || ||| Sbjct 57974 TTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGG 57915 Query 168720 GGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTT 168779 |||||||| |||||||| ||||| | ||||||||| | || || || ||| ||||| Sbjct 57914 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 57855 Query 168780 GTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCA 168839 || || || || || ||||||| ||||| ||||| ||| | || || || ||||| || Sbjct 57854 GTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 57795 Query 168840 CG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTT 168898 || ||| || | | || || || ||||| || || |||||||| || || |||||||| Sbjct 57794 CGATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 57736 Query 168899 TGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 168958 |||| || || || || || || || || || || ||||||| || || || ||| Sbjct 57735 TGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 57676 Query 168959 CGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACT 169018 || || |||| || ||||||||| | ||||| | ||||| || ||||| ||||| || Sbjct 57675 TGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 57616 Query 169019 GAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCAT 169078 ||| || |||||||||||||| || || ||| | ||||| | || |||| | ||| || Sbjct 57615 GAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTAT 57556 Query 169079 TCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAA 169138 |||||||| ||| ||||| |||||| | | | |||||||||| |||||||| ||| Sbjct 57555 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCG 57496 Query 169139 AGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTG 169198 || ||| || || || | ||||| || ||||||||||| || || |||||||| || Sbjct 57495 GGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 57436 Query 169199 GTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTT 169258 ||| || |||||||| |||| || ||||| | ||||| |||||||||||| | || Sbjct 57435 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 57376 Query 169259 TGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 169318 ||| || || | ||| | |||| ||| | | || | | ||||| || | ||||| Sbjct 57375 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 57316 Query 169319 TCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGAC 169378 ||||| |||||||| |||||||| || ||| | ||||| |||||||| || |||||||| Sbjct 57315 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGAC 57256 Query 169379 GTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGA 169438 ||||||||||| || || ||||| ||||||||| ||||||| ||| | || || || Sbjct 57255 TTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 57196 Query 169439 TCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||| |||||||| ||| || | ||||||||||| || || ||||| || || || || Sbjct 57195 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558451621328000