Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq1 500 1e-136 >seq1 Length=146306 Score = 500 bits (554), Expect = 1e-136 Identities = 685/957 (72%), Gaps = 0/957 (0%) Strand=Plus/Plus Query 215330 TACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTC 215389 ||| | || ||||||||||| | ||||| ||| | | | || || || || Sbjct 87903 TACATCGGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGACTGCAACTTCTGTATTT 87962 Query 215390 ATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCT 215449 || |||| ||||| ||||| ||||| || ||||| || || || | || || ||| || Sbjct 87963 ATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCT 88022 Query 215450 GGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCA 215509 || ||| || | || || ||||| || || |||||||| || | |||| ||| || Sbjct 88023 GGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCT 88082 Query 215510 ATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAAT 215569 || || || ||||| || || || |||||||||||| | ||||| || ||| | |||||| Sbjct 88083 ATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAAT 88142 Query 215570 GGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGA 215629 ||||| |||| | || || | | |||||| | ||||| | || || || Sbjct 88143 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 88202 Query 215630 AGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCC 215689 | ||||||||||| || | | | |||||| | |||||||| |||||| || || Sbjct 88203 CGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 88262 Query 215690 GCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTC 215749 || || || | || || ||| || ||| | | || ||| ||||||| || ||| Sbjct 88263 GCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTT 88322 Query 215750 TCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCT 215809 ||||||| |||||| || ||||| ||||| || ||||||| |||| |||| ||||||||| Sbjct 88323 TCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCT 88382 Query 215810 GAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGT 215869 ||||||||||| || ||||||||||| |||||||| ||||| |||||||| ||||| || Sbjct 88383 GAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGC 88442 Query 215870 TCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACT 215929 || | || ||| ||||| ||||| | || || ||| | | ||||| || || || Sbjct 88443 TCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACA 88502 Query 215930 GAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATC 215989 || | |||||| || | ||||||| ||||| |||||||| ||||| || || ||| Sbjct 88503 GAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATC 88562 Query 215990 GTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCA 216049 |||||||| || ||||| |||||||| | ||||||||||| || |||||| || || Sbjct 88563 GTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCT 88622 Query 216050 AGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATG 216109 | | | ||||||||| | || || | || || | |||| ||| ||||| | Sbjct 88623 CGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTA 88682 Query 216110 GGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGAC 216169 ||| | ||||||||||||||| | || |||||||| |||||||| ||||| || || Sbjct 88683 GGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 88742 Query 216170 GCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATG 216229 ||| || ||| ||||||||| || | ||||| | || ||||||||| Sbjct 88743 AGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATG 88802 Query 216230 GAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||||| ||||| || ||||| ||||| |||||||| ||||||| ||||||| |||| Sbjct 88803 GAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGCTGTTGAA 88859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742215643625600